Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30733
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.7  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.3  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   8.3  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    21   8.3  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    21   8.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 59  NHHDGRVFLWCHPFIIT--SVRDMGSRG 136
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 123 WDPEAKAEYPRSNKLVI 173
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 79  PRSTPPLSTPSNSNATKSSGLTSPLSVST 107


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +1

Query: 100 HHHISQRHGIQRQKQNTHAATSSSFVKH 183
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 577 PLFWPPGVHPSPLSSTPHSGLRFPCSFSS 491
           P   PP   PS  ++T  SGL  P S S+
Sbjct: 123 PRSTPPLSTPSNSNATKSSGLTSPLSVST 151


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 603 ALWH*FDNFRFF 568
           A WH FDN  FF
Sbjct: 44  ASWHDFDNSDFF 55


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 603 ALWH*FDNFRFF 568
           A WH FDN  FF
Sbjct: 44  ASWHDFDNSDFF 55


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 17  SHVNVLLKISIN**NHHDGRVFLWCHPFIITSVRDMGSR 133
           S V+VLL+ ++    +   RV  W  P  +  + D G R
Sbjct: 68  SSVDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVR 106


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 520 PNEGLKIMEKGEPQGAKKAEIVELMPK 600
           PN   ++  K +PQG  K +  EL+ K
Sbjct: 95  PNWWQELESKFDPQGEYKKKYDELLKK 121


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 520 PNEGLKIMEKGEPQGAKKAEIVELMPK 600
           PN   ++  K +PQG  K +  EL+ K
Sbjct: 95  PNWWQELESKFDPQGEYKKKYDELLKK 121


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 541 LSSTPHSGLRFPCSFSSILI 482
           L   P+S  +FP +F ++++
Sbjct: 416 LDKKPYSTYKFPTNFDALIV 435


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 541 LSSTPHSGLRFPCSFSSILI 482
           L   P+S  +FP +F ++++
Sbjct: 308 LDKKPYSTYKFPTNFDALIV 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,917
Number of Sequences: 336
Number of extensions: 2719
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)