Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30733
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         32   0.32 
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)                   30   1.7  
SB_22863| Best HMM Match : Integrase_Zn (HMM E-Value=0.79)             29   3.0  
SB_12343| Best HMM Match : OmpH (HMM E-Value=1.3)                      29   4.0  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   7.0  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  28   7.0  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +3

Query: 75  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAM 239
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSM 63


>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
          Length = 230

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 268 DW*FNASCS-NMASTCITFNSSGLASGPNNA*RMTSLLLRG 149
           DW FN   + ++   CI+ + + + +GP +  R TS L+RG
Sbjct: 151 DWAFNPHTNQDLVMICISIDDTNIENGPVDWDRFTSTLVRG 191


>SB_22863| Best HMM Match : Integrase_Zn (HMM E-Value=0.79)
          Length = 135

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +3

Query: 60  IIMTDEFFYGVTLSSSH-QSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEA 236
           II+  E   G+  + S  +S+ W P+  A+  +  K      L+GP  KP+ L +I V +
Sbjct: 67  IILAHEGHQGMVRTKSRLRSKLWWPQMDAQAEQFIKACYPCQLVGPRGKPEPL-LIMVSS 125

Query: 237 MLLQEALNYQ 266
            LL+E  +Y+
Sbjct: 126 -LLREKHSYR 134


>SB_12343| Best HMM Match : OmpH (HMM E-Value=1.3)
          Length = 229

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 86  IEKLVRHDDFTNLLRFLATRSRATPCTQ 3
           I++   HD+F  +LR LAT +   PC++
Sbjct: 46  IQEYRSHDNFVTILRLLATSALYEPCSE 73


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 180
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 159 NKLVIRQALLGPDAKPDELNVIQVEAMLLQEALNY 263
           NKLV+ Q LLG  AK + + +++ E   L+  +++
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLKGHIHH 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,706
Number of Sequences: 59808
Number of extensions: 338111
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)