Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30733
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 167 RHSSSIVRSRCQTR*IKCYTGG 232
           +H SS   + C    ++C+TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 66  MTDEFFYGVTLSSSHQSETW 125
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 63  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV 170
           + TD      ++SSS +++ W P+   E    N L+
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 59  NHHDGRVFLWCHPFIITS 112
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 487 ELKKRSRESASPNEGLKIME 546
           E KK++++S SP+E    ME
Sbjct: 539 EEKKKTKQSLSPSENQSKME 558


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 605 LPFGINSTISAFLAP 561
           LPFG+ +TIS+   P
Sbjct: 45  LPFGVENTISSVPQP 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,427
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)