Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30733
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9S...    30   1.1  
At3g58050.1 68416.m06471 expressed protein                             28   4.3  
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr...    28   5.7  

>At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9SA23
           Syntaxin 51 (AtSYP51) {Arabidopsis thaliana}; supporting
           cDNA gi|13811643|gb|AF355755.1|AF355755
          Length = 232

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 174 RQALLGPDAKPDELNVIQVEAMLLQEALNYQSQY*KLVNQGM 299
           R +LLGPD KPD+ ++ +V  M  Q  + YQ Q  +  ++G+
Sbjct: 106 RDSLLGPDIKPDD-SMSRVTGMDNQGIVGYQRQVMREQDEGL 146


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 93  TLSSSHQSETWDPEAKAEYPRSN 161
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 886

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 342 VNVTGASGNSMSRRTCLDSPTFNTATGSLMLLVVTWLP 229
           +N+     N  S R   D P  N     L+ LVV W P
Sbjct: 795 INIVAELANQCSSREPRDRPDMNHVVNVLVSLVVQWKP 832


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,056
Number of Sequences: 28952
Number of extensions: 240926
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)