Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30732
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    28   7.9  

>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 371 PKKAYIGAARHISLISNCRCHNAMQSKL 454
           P++     A+HI+L++NC+C +A  + +
Sbjct: 28  PRRRRHAHAKHIALLTNCKCASAASASV 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,467
Number of Sequences: 37544
Number of extensions: 284179
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)