Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30731
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   141   5e-35
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   141   5e-35
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    40   2e-04
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    26   3.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   4.9  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    25   4.9  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   8.6  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  141 bits (342), Expect = 5e-35
 Identities = 62/77 (80%), Positives = 71/77 (92%)
 Frame = +3

Query: 24  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 204 IKNGKKVTAFVPRDGCL 254
           IKNGKKVTAFVP DGCL
Sbjct: 75  IKNGKKVTAFVPHDGCL 91



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 38/52 (73%), Positives = 45/52 (86%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 92  NFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  141 bits (342), Expect = 5e-35
 Identities = 62/77 (80%), Positives = 71/77 (92%)
 Frame = +3

Query: 24  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 204 IKNGKKVTAFVPRDGCL 254
           IKNGKKVTAFVP DGCL
Sbjct: 75  IKNGKKVTAFVPHDGCL 91



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 38/52 (73%), Positives = 45/52 (86%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 92  NFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +3

Query: 108 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -1

Query: 502 HNIYYVLGFYIL*TYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 329
           HN  Y++  Y   T K++  R  +++HN     W+ L  F+      + YFY   ++  S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237

Query: 328 GNVTDGV 308
            NV++ +
Sbjct: 238 SNVSNRI 244


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 45  WADKEFKKAHMGTKWKANPFGGASHAKGIV 134
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 406 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 284
           SW L+++ V S+E+  GY   L     N+ D  G+    ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 141 KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLTTSKKTTK 278
           K   E K+ + ++ K  RV++ K  KKV +F P+    TTS  +++
Sbjct: 7   KESTEVKKKDGSMNK--RVKVAKLPKKVDSFSPKKKKNTTSSGSSE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,107
Number of Sequences: 5004
Number of extensions: 46792
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)