Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30731
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   136   7e-33
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   136   7e-33
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   133   7e-32
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   5e-07
04_01_0440 + 5746474-5746662,5746895-5747251                           28   3.7  
02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389...    28   3.7  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   6.5  

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  136 bits (330), Expect = 7e-33
 Identities = 58/76 (76%), Positives = 67/76 (88%)
 Frame = +3

Query: 27  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 206
           HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16  HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74

Query: 207 KNGKKVTAFVPRDGCL 254
           KNGKK+ AFVP DGCL
Sbjct: 75  KNGKKIAAFVPNDGCL 90



 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/52 (88%), Positives = 50/52 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 91  NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  136 bits (330), Expect = 7e-33
 Identities = 58/76 (76%), Positives = 67/76 (88%)
 Frame = +3

Query: 27  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 206
           HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16  HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74

Query: 207 KNGKKVTAFVPRDGCL 254
           KNGKK+ AFVP DGCL
Sbjct: 75  KNGKKIAAFVPNDGCL 90



 Score =  136 bits (330), Expect = 7e-33
 Identities = 58/76 (76%), Positives = 67/76 (88%)
 Frame = +3

Query: 27  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 206
           HRR QRWADK +KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244

Query: 207 KNGKKVTAFVPRDGCL 254
           KNGKK+ AFVP DGCL
Sbjct: 245 KNGKKIAAFVPNDGCL 260



 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/52 (88%), Positives = 50/52 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 261 NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 44/50 (88%), Positives = 48/50 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 403
           N IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 91  NFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  133 bits (322), Expect = 7e-32
 Identities = 58/81 (71%), Positives = 67/81 (82%)
 Frame = +3

Query: 27  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 206
           HRR QRWADK +KK+H G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87  HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145

Query: 207 KNGKKVTAFVPRDGCLTTSKK 269
           KNGKK+ AFVP DGCL   K+
Sbjct: 146 KNGKKIAAFVPNDGCLNFIKE 166


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +2

Query: 272 DEVLVAGFGRKGHAVGDIPGVRFKVVK 352
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>04_01_0440 + 5746474-5746662,5746895-5747251
          Length = 181

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 41  AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 139
           A+GG      P GY+ +G PF  C    KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159


>02_04_0437 -
           22938263-22938273,22938345-22938444,22938727-22938908,
           22938989-22939092,22939792-22939857,22940032-22940105,
           22940241-22940309,22940902-22941028,22941740-22942971,
           22943163-22943486,22943500-22943793
          Length = 860

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 179 PQMRPCTAH*ERKESDRIRPP*RLPNHIEENDE 277
           PQ+RPC  H    E  R      L N++ +N+E
Sbjct: 601 PQLRPCDVHATESEVVRCYKAATLDNYVPDNEE 633


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -3

Query: 440 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 291
           T GH+++  P+ L     LCR   E     + ++  P  E  E H+  DL   I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,557
Number of Sequences: 37544
Number of extensions: 346989
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)