Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30731
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 148 2e-36
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 103 8e-23
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.025
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 33 0.10
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) 28 3.8
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6) 27 6.7
SB_3221| Best HMM Match : rve (HMM E-Value=3) 27 6.7
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 8.9
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 148 bits (359), Expect = 2e-36
Identities = 66/77 (85%), Positives = 72/77 (93%)
Frame = +3
Query: 24 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
+HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14 SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73
Query: 204 IKNGKKVTAFVPRDGCL 254
IKNGKK+TAFVP DGCL
Sbjct: 74 IKNGKKITAFVPNDGCL 90
Score = 56.4 bits (130), Expect = 1e-08
Identities = 22/27 (81%), Positives = 27/27 (100%)
Frame = +2
Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGV 334
N+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 91 NYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 103 bits (247), Expect = 8e-23
Identities = 47/52 (90%), Positives = 52/52 (100%)
Frame = +2
Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
N+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 92 NYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERPRS 143
Score = 77.0 bits (181), Expect = 8e-15
Identities = 34/39 (87%), Positives = 37/39 (94%)
Frame = +3
Query: 138 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCL 254
++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCL
Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCL 91
>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
Length = 302
Score = 35.5 bits (78), Expect = 0.025
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +3
Query: 123 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 239
KG+ ++ + K+PNSA RKC ++L NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 33.5 bits (73), Expect = 0.10
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Frame = -1
Query: 355 YFYHLKTNS---GNVTDGVTFTTESRH*YFVVFFDVVRQPSRGTNAVTFFPFLMSCTRTH 185
YF+ L +S + G + TE + +F +F + S P L+ T
Sbjct: 827 YFHSLVVHSPIQSRLVSGRSVNTEQQERHFNIFSAIAENTSSRRPDEIITPGLVRENLTR 886
Query: 184 LRMAELGCLASTPTFSRTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 41
+ G S F R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 887 ASIYLSGPELSRHRF-RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 68 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 166
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
Length = 471
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 248 TVTGDECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 132
T D+ F NE AD R GL+ NF+ED
Sbjct: 159 TTDPDKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197
>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
Length = 294
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 236 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 132
D+ F NE AD R GL+ NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 432 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 295
S T TYDL SF+S+ + + LAT +K++P + + L+P
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKP 53
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 49 RTKNSRKPTWVRNGRLTLSVVHLT 120
R N++KP +R+GR+T+S+ +T
Sbjct: 110 RDTNTKKPVHLRDGRVTVSLAAMT 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,276
Number of Sequences: 59808
Number of extensions: 394925
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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