Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30731
         (508 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   149   4e-36
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               149   4e-36
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   149   4e-36
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   102   8e-22
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    43   5e-04
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               43   5e-04
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    43   5e-04
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    43   5e-04
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    43   5e-04
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    43   5e-04
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.     30   5.3  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  149 bits (362), Expect = 4e-36
 Identities = 66/77 (85%), Positives = 73/77 (94%)
 Frame = +3

Query: 24  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 204 IKNGKKVTAFVPRDGCL 254
           IKNGKK+TAFVP DGCL
Sbjct: 75  IKNGKKITAFVPNDGCL 91



 Score =  103 bits (248), Expect = 3e-22
 Identities = 50/52 (96%), Positives = 50/52 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 92  NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  149 bits (362), Expect = 4e-36
 Identities = 66/77 (85%), Positives = 73/77 (94%)
 Frame = +3

Query: 24  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 204 IKNGKKVTAFVPRDGCL 254
           IKNGKK+TAFVP DGCL
Sbjct: 75  IKNGKKITAFVPNDGCL 91



 Score =  103 bits (248), Expect = 3e-22
 Identities = 50/52 (96%), Positives = 50/52 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 92  NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  149 bits (362), Expect = 4e-36
 Identities = 66/77 (85%), Positives = 73/77 (94%)
 Frame = +3

Query: 24  NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 203
           +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15  SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74

Query: 204 IKNGKKVTAFVPRDGCL 254
           IKNGKK+TAFVP DGCL
Sbjct: 75  IKNGKKITAFVPNDGCL 91



 Score =  103 bits (248), Expect = 3e-22
 Identities = 50/52 (96%), Positives = 50/52 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
           N IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 92  NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  102 bits (244), Expect = 8e-22
 Identities = 49/51 (96%), Positives = 49/51 (96%)
 Frame = +2

Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 406
           N IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 9   NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +3

Query: 90  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 248
           K  P  G    KG+VL     + K+PNSA RKC RV+L   G++   F+P +G
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99


>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
          Length = 1332

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 68  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 196
           SPHG +M G P          RP ES+C         PQ RPC
Sbjct: 37  SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,682,478
Number of Sequences: 237096
Number of extensions: 1831738
Number of successful extensions: 6053
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6053
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)