Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30731
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 132 2e-31
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 123 8e-29
At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to ... 29 2.4
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.2
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.2
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 27 7.3
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 27 9.6
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl... 27 9.6
At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 9.6
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 9.6
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 27 9.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 132 bits (318), Expect = 2e-31
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = +3
Query: 30 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 209
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 210 NGKKVTAFVPRDGCL 254
NGKK+ AFVP DGCL
Sbjct: 76 NGKKIAAFVPNDGCL 90
Score = 101 bits (241), Expect = 4e-22
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +2
Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 123 bits (296), Expect = 8e-29
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +3
Query: 30 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 209
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 210 NGKKVTAFVPRDGCL 254
NGKK+ AFVP DGCL
Sbjct: 76 NGKKIAAFVPNDGCL 90
Score = 101 bits (241), Expect = 4e-22
Identities = 46/52 (88%), Positives = 51/52 (98%)
Frame = +2
Query: 254 NHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 409
N+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 91 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
>At5g50790.1 68418.m06292 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 289
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 344 VVKVANVSLLALYKEKKERPRS*VYIVISDLLSGSALFI 460
VV++ +SL Y KKE+ + +++ D+L A+F+
Sbjct: 80 VVQIVYISLFFFYAPKKEKTLTVKFVLFVDVLGFGAIFV 118
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 45 WADKEFKKAHMGTKWKANPFGGASHAKG 128
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 45 WADKEFKKAHMGTKWKANPFGGASHAKG 128
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 306 PLRPNPATSTSSFSSMWLGNRHGGRMRSLSF 214
P NP+T SSF + L N + R++S+SF
Sbjct: 19 PPSSNPSTLRSSFRGVSLNNNNLHRLQSVSF 49
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 479 ILHFMNL*TTRFPTAGHLSQCTPMILVAPFSLCRERGETRWLLLPP 342
+LHF+NL ++ HL Q M+++ + + G+T W ++ P
Sbjct: 1731 VLHFLNLFQSKQLGHDHLVQAMQMLILPMLAHAFQNGQT-WEVIDP 1775
>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to caffeine
synthase [Camellia sinensis][GI:9967143],
defense-related protein cjs1 [Brassica
carinata][GI:14009292],
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase [Clarkia breweri][GI:6002712]
Length = 619
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 235 TNAVTFFPFLMSCTRTHLRMAELGCLASTPTFS 137
T A+ C+ +HL++A+LGC TFS
Sbjct: 41 TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 45 WADKEFKKAHMGTKWKANPFGGASHAKG 128
W+ + A + T WK +PFG A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 209 ERKESDRIRPP*RLPNH-IEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 367
E+K S ++ P ++ N + E D+V GF K V D+P + +VV + NVS
Sbjct: 821 EKKSSPKV--PKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 159 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLTTSKKTTKY*WRDSVVKVTPSV 320
K+PNSA RK +V+L N + A +P +G + T R VK +P V
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEGHNSQEHSTVLI--RGGRVKDSPGV 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,220
Number of Sequences: 28952
Number of extensions: 260083
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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