Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.9  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   1.9  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   1.9  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   2.6  
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    27   3.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.5  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   4.5  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   5.9  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   5.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   7.8  

>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 19   KVPKLLAIVTKRVLNPTYTVVKCVLVCIFICEFLNCHRRIPSKFRY-RQFGHFP*FFLNR 195
            +V K    ++K  +  + TVV CV      C  +NCH  I   F +  +FG     FL+ 
Sbjct: 803  RVYKEFIRLSKLCMRISSTVVDCVSAVREACSGVNCHDLIYHVFSFAAEFGQRILRFLSF 862

Query: 196  SNNIQYCKYPKVTSL 240
             +  Q     K+TSL
Sbjct: 863  DSYWQTKLKRKITSL 877


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +1

Query: 40  IVTKRVLNPTYTVVKCVLVCIFICEFLNCHRRIPSKFRYRQFGHFP*FFLNRSNNIQYCK 219
           +  K+++     ++  V V + I + L  +  IP   R   FG F   ++  S++I+ CK
Sbjct: 659 VTNKQLVLQVLIIMATVPVTLKIADSLQRNIAIPPILRLVAFGLFITSYIIPSHHIRSCK 718

Query: 220 YPKVTSLKLLF 252
           +  +  L +LF
Sbjct: 719 HYFLDRLAILF 729


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -2

Query: 584 GTILCMGGYCCKWSHQCRVAEDGRP------AAGAISLAADSIL 471
           G  L +GGY CK  H   +A  G        A G+ SLAA S+L
Sbjct: 130 GAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVL 173


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 608 RELCREQPGTILCMGGYCCKWSHQCRV--AEDGRPAAGAISLAADS 477
           R  C + P +  C GG+CCK    CR    +   PA   +++  DS
Sbjct: 482 RTQCVDTPPS--CCGGHCCK-EESCRTENCKGAYPANATVTVEEDS 524


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 639 GHLKGAFDFWLAKFPFG 689
           G  KGAF++W A+ P G
Sbjct: 128 GKGKGAFEYWAARIPIG 144


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 240 KGRYFRVFTVLYVVTSI*EELRKMA 166
           K RYF   + LY++T   E+L+KMA
Sbjct: 703 KLRYFEKLSFLYLITGNAEKLQKMA 727


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 469 NKMLSAARLIAPAAGLPSSATLHWC 543
           N+  S  RL++PA+ + ++ TL WC
Sbjct: 308 NQPFSEIRLLSPASEVFNAKTLSWC 332


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -3

Query: 505 QGRSVWRQTAFCFYKVRRATTEINRKARINSMLTVVTLRPRVQTRMSRYCIRHLT 341
           +G SV     FC   VRR   E N K   +  ++++     + T   R+ + H T
Sbjct: 143 RGTSVMVNDLFCTLPVRRKLLEKNYKREFSKAISLLQAYATISTN-KRFMVYHQT 196


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 170 WPNCRYRNFDGILL*QFRNSQINIHTNTHFTTVYVGF 60
           +  C YRNF+G+L  +F+++  N+  +     VY  F
Sbjct: 24  YKKCSYRNFNGLLQARFQSN--NLSWSNRNRVVYKSF 58


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 627 GPTFGHLKGAFDFWLAKFPF 686
           GP F  ++G F+FW++K P+
Sbjct: 188 GPPFPMVQG-FEFWISKLPY 206


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 112 EFLNCHRRIPSKFRYRQFG 168
           EF+  H R  S FRYR FG
Sbjct: 782 EFVMPHLRASSSFRYRLFG 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,501
Number of Sequences: 5004
Number of extensions: 62263
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)