Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0686 - 5855216-5858263                                           31   1.2  
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    29   3.5  
04_04_0773 - 27974909-27977191                                         29   4.7  
06_01_0555 + 3952502-3954262                                           28   6.2  
12_01_0714 + 6223269-6226250                                           28   8.1  
11_02_0133 + 8661030-8661141,8661727-8662031,8662158-8662331,866...    28   8.1  
09_04_0601 + 18889264-18889334,18889451-18889491,18889600-18889784     28   8.1  

>12_01_0686 - 5855216-5858263
          Length = 1015

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 538 WCDHLQQYPPIHRM--VPGCSLHSSLQCGSFQDPHSVT 645
           WCDH+ +Y P  ++  +P CSL S   C SF    S+T
Sbjct: 233 WCDHIAKYTPKLQVLSLPYCSL-SGPVCASFAAMRSLT 269


>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 440 FSCRAPHLIKTKCCLPPD*S-PLQQVCHLLQLCTGATTCSS 559
           F CR  H   T  CL  D   P+ QVC+   +C G   CS+
Sbjct: 36  FHCRHCHNESTVICLVCDTEQPVAQVCYNCGVCMGEYFCSA 76


>04_04_0773 - 27974909-27977191
          Length = 760

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 507 SRSAIFCNSALVRPLAAVPTHTQDGTWLFPTQLSAVRVLPGPTFGHLKG 653
           SR     N  +++P    P       W F    S+ +V PGPTF  + G
Sbjct: 494 SRGPSVQNPGILKPDITGPGVNVLAAWPFQVGPSSAQVFPGPTFNIISG 542


>06_01_0555 + 3952502-3954262
          Length = 586

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 416 FNANSGDSSSQSADPNEQILY*---TLDSLTEELQLRNLLAY 300
           F   +GD+++ S D     L+    TLD  T E+ LRNL+AY
Sbjct: 409 FAPTNGDATTVSFDAKTATLHLPVVTLDGSTTEVVLRNLVAY 450


>12_01_0714 + 6223269-6226250
          Length = 993

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +1

Query: 538 WCDHLQQYPPIHRM--VPGCSLHSSLQCGSFQDPHSVT----*RGHLTSGWPNFHLG 690
           WCD++ +Y P  ++  +P CSL   + C SF    ++T       HL+   P F  G
Sbjct: 211 WCDNIAKYTPKLQVLSLPYCSLSGPI-CASFSALQALTMIELHYNHLSGSVPEFLAG 266


>11_02_0133 +
           8661030-8661141,8661727-8662031,8662158-8662331,
           8662469-8662783,8662886-8663456,8663474-8663786,
           8663870-8663968,8664202-8664315,8664403-8664463,
           8664565-8664657,8664742-8664927
          Length = 780

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 602 LCREQP-GTILCMGGYCCKW 546
           LC EQP GT+LC G Y CK+
Sbjct: 688 LCHEQPRGTVLC-GYYTCKF 706


>09_04_0601 + 18889264-18889334,18889451-18889491,18889600-18889784
          Length = 98

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 478 AFCFYKVRRATTEINRKARINSMLT 404
           AF FYK+   ++E++R+ + NS++T
Sbjct: 63  AFVFYKLSVVSSELHRQRKTNSLIT 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,629
Number of Sequences: 37544
Number of extensions: 426730
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)