Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   29   4.8  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)                 28   8.3  
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_22632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -3

Query: 616 RTAESCVGNSQVPSCVWVGTAASGRTSAELQKMADLLQGRSVWRQTAFCFYKVRRATTEI 437
           R+  S   ++Q  SC+ VGT A+G  S  + + +  +QG++    T  C + V R T  I
Sbjct: 599 RSYSSLRPHTQTVSCINVGTNAAGNQS--ISRHSPTMQGQADSSNTPECQHLVARQTNFI 656

Query: 436 NRKAR 422
            +  R
Sbjct: 657 RKFPR 661


>SB_10756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 284 PQSSLRRLVNYVTAILRSNCQVSNTISAHSGLHSGTKSHHC 406
           P SS  R   Y   +   +   SNT+  H  +H+G K  +C
Sbjct: 611 PTSSASRKYRYTCDVCLKSFSRSNTLITHKRIHTGDKPFNC 651


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
 Frame = +2

Query: 239 LSYCSNLYITVLIY*PQSSL--RRLVNYVTAILRS-------NCQ-VSNTISAHSGLHSG 388
           + +C +LY TV+IY P SS    R   Y T ++ +       +C+ +  T+  ++ L S 
Sbjct: 307 IHHCHHLYPTVIIYTPPSSSIPHRHHPYPTVVIYTPLSSSIHHCRHLYTTVVIYTPLSSS 366

Query: 389 TKSHHC*H*INSSFTVY----FSCRAPHLIKTKCCLPPD*SPLQQVCHLLQLCTGATTCS 556
              HHC H + ++  +Y     S    HL  T    PP  S +    HL       T  S
Sbjct: 367 I--HHC-HHLYTTVIIYTPPSSSIHHRHLYITVIYTPPS-SSIHHRHHLYTTAIIYTPPS 422

Query: 557 ST--HPYTGWYLAVPYTALCSAGPSRTH 634
           S+  H +  +   + YT L S+ P   H
Sbjct: 423 SSIHHCHHLYPTVIIYTPLSSSIPYCHH 450


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 28  KLLAIVTKRVLNPTYTVVKCVLVCIFICEFLNCHRRIPSKFRYRQF 165
           + L I   +V    +TV KC +   FI  F    R +PS   Y QF
Sbjct: 231 RYLRICRPKVYRKHFTVRKCFIFLAFIWVFPALVRLLPSVLGYAQF 276


>SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)
          Length = 263

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -3

Query: 550 SGRTSAELQKMADLLQGRSVWRQTAFCFYKV 458
           +GR+++EL +   +L+GR +W+    CFY++
Sbjct: 61  AGRSASELTRPEAVLEGRELWQ----CFYRL 87


>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 373 RMSRYCIRHLTV*PKNCSYV 314
           R+  +C+RH+   P+NCS V
Sbjct: 388 RLGLFCLRHMCASPENCSLV 407


>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 602 LCREQPGTILCMGGYCCK 549
           +CRE+P T+ C+  YC K
Sbjct: 281 ICRERPKTLPCLHHYCAK 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,020,518
Number of Sequences: 59808
Number of extensions: 495038
Number of successful extensions: 1385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)