Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      27   0.56 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    25   3.0  
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     24   5.3  

>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 22  VPKLLAIVTKRVLNPTYTVVKCVLVCIFICEFLNCHRR 135
           V ++LAI T   + P YT   C +  + +  ++ C+ R
Sbjct: 308 VARVLAIATVASVFPLYTAAACAVHALLMATWVFCYER 345


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 356 TISAHSGLHSGTKSHHC*H 412
           ++  H   H+GTK H C H
Sbjct: 169 SLQNHVNTHTGTKPHRCKH 187


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 571 HRMVPGCSLHSSL-QCGSFQDPHS 639
           H +   C L S L +C  F++PHS
Sbjct: 197 HYIDENCKLSSILIECSEFENPHS 220


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,104
Number of Sequences: 2352
Number of extensions: 16413
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)