Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   2.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   2.4  
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical p...    27   9.7  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   9.7  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 474  NAVCRQTDRPCSRSAIFCNSALVRPLAAVPTHT-QDGTWLFPTQLSAVRVLPG 629
            +A C  T RPCS S   CN     P + V   T Q    L  +Q +  R LPG
Sbjct: 3868 DASCGGTTRPCSESEFRCNDGKCIPGSKVCDGTIQCSDGLDESQCTLRRCLPG 3920


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 474  NAVCRQTDRPCSRSAIFCNSALVRPLAAVPTHT-QDGTWLFPTQLSAVRVLPG 629
            +A C  T RPCS S   CN     P + V   T Q    L  +Q +  R LPG
Sbjct: 3868 DASCGGTTRPCSESEFRCNDGKCIPGSKVCDGTIQCSDGLDESQCTLRRCLPG 3920


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical
           protein F58H1.1b protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 208 VCCYFDLRRITENGRIAD 155
           VCC FD RR+ E G+  D
Sbjct: 383 VCCQFDFRRMPEGGKSCD 400


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical
           protein F58H1.1a protein.
          Length = 1143

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 208 VCCYFDLRRITENGRIAD 155
           VCC FD RR+ E G+  D
Sbjct: 381 VCCQFDFRRMPEGGKSCD 398


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 581 TILCMGGYCCKWSHQCRVAEDGRPAAGAISLAADSIL 471
           T LC G  CC WS  C  +   +   G  S+   + L
Sbjct: 696 TTLCEGQSCCNWSEWCHWSMCDKECGGGQSIRTRTCL 732


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 458 HLIKTKCCLPPD*SPLQQVCHLLQLCTGATTCSS 559
           H   T+C +  D  PL Q CH  Q CT +  C+S
Sbjct: 448 HSSCTECLVSVD--PLCQWCHPTQSCTTSARCTS 479


>Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical
           protein C36B1.6 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 70  YTVVKCVLVCIFICEFLNCHRRIPS 144
           Y++  C+ +C   C F   +R +P+
Sbjct: 134 YSITTCIFICCCCCIFTGAYRSVPT 158


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 458 HLIKTKCCLPPD*SPLQQVCHLLQLCTGATTCSS 559
           H   T+C +  D  PL Q CH  Q CT +  C+S
Sbjct: 450 HSSCTECLVSVD--PLCQWCHPTQSCTTSARCTS 481


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,613
Number of Sequences: 27780
Number of extensions: 373926
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)