Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30730
(696 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 25 0.69
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 23 2.1
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 23 2.1
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 23 3.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.4
S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor prot... 21 8.5
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 25.0 bits (52), Expect = 0.69
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 359 ISAHSGLHSGTKSHHC*H 412
+ H LH+G K +HC H
Sbjct: 25 LKTHMRLHTGEKPYHCSH 42
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 445 TEINRKARINSMLTVVTLRPRVQTRMSRYCI 353
T+ NR ARI + +RPR + S+ CI
Sbjct: 600 TKTNRIARIFDSASRTAVRPRYISPASQVCI 630
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 23.4 bits (48), Expect = 2.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 445 TEINRKARINSMLTVVTLRPRVQTRMSRYCI 353
T+ NR ARI + +RPR + S+ CI
Sbjct: 690 TKTNRIARIFDSASRTAVRPRYISPASQVCI 720
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 22.6 bits (46), Expect = 3.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = +2
Query: 572 TGWYLAVPYTALCSAG-PSRTH 634
TGW V A+C++G RTH
Sbjct: 133 TGWSAVVITAAICTSGIVGRTH 154
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 448 TIVILCRAPHII 459
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 516 TIVILCRAPHII 527
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +2
Query: 431 TVYFSCRAPHLI 466
T+ CRAPH+I
Sbjct: 516 TIVILCRAPHII 527
>S76956-1|AAB33931.1| 168|Apis mellifera olfactory receptor
protein.
Length = 168
Score = 21.4 bits (43), Expect = 8.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 92 NTHFTTVYVGFNTLFVTMASNFGTFS 15
++H T ++ + TLF TFS
Sbjct: 120 SSHPTAAFISYGTLFFIYVQPSATFS 145
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,332
Number of Sequences: 438
Number of extensions: 4799
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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