Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30730
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65600.1 68418.m08253 legume lectin family protein / protein ...    28   5.1  
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    28   6.8  
At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21...    27   9.0  
At1g53490.1 68414.m06064 bZIP protein                                  27   9.0  

>At5g65600.1 68418.m08253 legume lectin family protein / protein
           kinase family protein contains Pfam domains PF00138:
           Legume lectins alpha domain, PF00139: Legume lectins
           beta domain and PF00069: Protein kinase domain
          Length = 675

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 466 KNKMLSAARLIAPAAGLPSSATLHWCDHLQQYPPIHRMVPGCSLHSSL 609
           KN+ L+  ++I+          + WC+   ++  I+ +VP  SL+S L
Sbjct: 389 KNEFLNEVKIISKLRHRNLVQLIGWCNEKNEFLLIYELVPNGSLNSHL 436


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 464 IKTKCCLPPD*SPLQQVCHLLQL--CTGATTCSS 559
           I ++  LPP  S LQ+V H++Q   C GAT  +S
Sbjct: 53  IFSRSILPPSSSSLQEVLHIIQYSRCFGATIKNS 86


>At1g60050.1 68414.m06765 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 374

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 544 DHLQQYPPIHRMVPGCSLHSSLQCGSF 624
           D +Q+YP + ++V   SL  +LQC  F
Sbjct: 217 DTVQKYPQVMKVVSAYSLAGTLQCAIF 243


>At1g53490.1 68414.m06064 bZIP protein
          Length = 229

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 696 PSPQMEIWPARSQMPPLSDRMWVLEGPALQRAV*G--TARYHPVYG 565
           P P+ EIWPAR             + PA+   +      R HPVYG
Sbjct: 151 PGPKDEIWPARQNSSNSGPFDISTDSPAIPSDLGNRRAGRGHPVYG 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,148
Number of Sequences: 28952
Number of extensions: 332535
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)