Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30729
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   7.3  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   9.7  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   9.7  

>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 596 DLNECPRDSGG 564
           DLNECP D GG
Sbjct: 176 DLNECPYDQGG 186


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 504 NQDFVK*VLFRRLKW*ETCRPTRVARTFV 590
           NQDF+   +     + + C+P R+ +TF+
Sbjct: 116 NQDFIDCCIIACSAYEKLCQPLRIKKTFI 144


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 653 AEAVGPAPRMPPELDRGPPDLNE--CPRDSGG 564
           AEAVG A  + P+  + P DL +   P++S G
Sbjct: 273 AEAVGVADSIDPDWHQWPDDLRDVSSPKESDG 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,324
Number of Sequences: 5004
Number of extensions: 45008
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)