Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30729
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    28   7.7  
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                28   7.7  

>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 596 PGAPGPVRAAF--GARGPRLPP 655
           PGAPGP RA    GA  P++PP
Sbjct: 484 PGAPGPERAGSRDGACAPKMPP 505


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 651 GSRGPRAPNAARTGPGAPGS 592
           GSRGP  P  A   PG+PG+
Sbjct: 226 GSRGPVGPRGANGVPGSPGA 245


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 638 PAPRMPPELDRGPPDLNECPRDSGGST 558
           P P MPP+   G P L    ++SGG +
Sbjct: 175 PTPPMPPKSPHGSPGLMAAQQNSGGQS 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,920,977
Number of Sequences: 59808
Number of extensions: 366762
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)