Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30729
         (660 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    25   2.8  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    25   2.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   6.5  

>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 654 GGSRGPRAPNAARTGPGAPGS 592
           GG  GP +P ++  GP +P S
Sbjct: 195 GGGGGPNSPISSHMGPNSPMS 215


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 659 NKAEAVGPAPRMPPELDR-GPPDLNECPRD 573
           ++++A  P P +PP  DR   P   + P+D
Sbjct: 649 SQSQASEPTPALPPRADRDSKPSSRDRPKD 678


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -1

Query: 657 QGGSRGPR-APNAARTGPGAPGSK 589
           Q G  GP  AP      PGAPG K
Sbjct: 393 QPGIAGPAGAPGGGEGRPGAPGPK 416



 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 651 GSRGPRAPNAARTGPGAPGSKRMSSRLG 568
           G RG   P   +  PG PG + M    G
Sbjct: 438 GERGQMGPKGGQGVPGRPGPEGMPGDKG 465


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,082
Number of Sequences: 2352
Number of extensions: 12437
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)