Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30729
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071937-1|AAH71937.1| 312|Homo sapiens zinc finger protein 414... 30 6.4
BC007310-1|AAH07310.1| 312|Homo sapiens zinc finger protein 414... 30 6.4
X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3 ... 30 8.4
U95299-1|AAC32288.1| 2003|Homo sapiens Notch4 protein. 30 8.4
U89335-1|AAC63097.1| 1999|Homo sapiens notch4 protein. 30 8.4
D63395-1|BAA09708.1| 1095|Homo sapiens notch related protein pro... 30 8.4
BX284927-1|CAM25850.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 30 8.4
BX284686-1|CAM26209.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 30 8.4
AL845509-1|CAI18564.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 30 8.4
AL845464-12|CAI41803.1| 2003|Homo sapiens Notch homolog 4 (Droso... 30 8.4
AL662884-27|CAI18362.1| 2003|Homo sapiens Notch homolog 4 (Droso... 30 8.4
AL662830-9|CAI17543.1| 2005|Homo sapiens Notch homolog 4 (Drosop... 30 8.4
AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen... 30 8.4
AC107069-1|AAX93111.1| 538|Homo sapiens unknown protein. 30 8.4
>BC071937-1|AAH71937.1| 312|Homo sapiens zinc finger protein 414
protein.
Length = 312
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 647 AVGPAPRMPPELDRGPPDLNECPRDSGGSTCFLPF 543
A PAP PP LDR PP P S LPF
Sbjct: 202 AQSPAPPPPPALDREPPAPERPPEVDPASAPGLPF 236
>BC007310-1|AAH07310.1| 312|Homo sapiens zinc finger protein 414
protein.
Length = 312
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 647 AVGPAPRMPPELDRGPPDLNECPRDSGGSTCFLPF 543
A PAP PP LDR PP P S LPF
Sbjct: 202 AQSPAPPPPPALDREPPAPERPPEVDPASAPGLPF 236
>X80031-1|CAA56335.1| 1670|Homo sapiens type IV collagen alpha 3
chain protein.
Length = 1670
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSKRMSSR--LGW 565
G+RGP+ P+ PG+PGS R R GW
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
>U95299-1|AAC32288.1| 2003|Homo sapiens Notch4 protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>U89335-1|AAC63097.1| 1999|Homo sapiens notch4 protein.
Length = 1999
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1970 PSPERGSPQLDCGPPALQEMPINQGG 1995
>D63395-1|BAA09708.1| 1095|Homo sapiens notch related protein protein.
Length = 1095
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1066 PSPERGSPQLDCGPPALQEMPINQGG 1091
>BX284927-1|CAM25850.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>BX284686-1|CAM26209.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>AL845509-1|CAI18564.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>AL845464-12|CAI41803.1| 2003|Homo sapiens Notch homolog 4
(Drosophila) protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>AL662884-27|CAI18362.1| 2003|Homo sapiens Notch homolog 4
(Drosophila) protein.
Length = 2003
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1974 PSPERGSPQLDCGPPALQEMPINQGG 1999
>AL662830-9|CAI17543.1| 2005|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2005
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 638 PAP-RMPPELDRGPPDLNECPRDSGG 564
P+P R P+LD GPP L E P + GG
Sbjct: 1976 PSPERGSPQLDCGPPALQEMPINQGG 2001
>AJ288487-1|CAC36101.1| 1670|Homo sapiens alpha3 type IV collagen
protein.
Length = 1670
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSKRMSSR--LGW 565
G+RGP+ P+ PG+PGS R R GW
Sbjct: 366 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 396
>AC107069-1|AAX93111.1| 538|Homo sapiens unknown protein.
Length = 538
Score = 29.9 bits (64), Expect = 8.4
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSKRMSSR--LGW 565
G+RGP+ P+ PG+PGS R R GW
Sbjct: 318 GARGPQGPSGPPGVPGSPGSSRPGLRGAPGW 348
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,399,842
Number of Sequences: 237096
Number of extensions: 1787937
Number of successful extensions: 6849
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6779
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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