Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30729
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 30 1.7
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 30 1.7
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 30 1.7
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 30 1.7
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 30 1.7
AC024211-4|AAP82631.1| 487|Caenorhabditis elegans Hypothetical ... 29 2.2
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.9
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 27 8.9
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 27 8.9
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSK 589
G GP P R GPGAPG K
Sbjct: 191 GETGPTGPPGYRGGPGAPGDK 211
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSK 589
G GP P R GPGAPG K
Sbjct: 228 GETGPTGPPGYRGGPGAPGDK 248
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGS 592
G +GP+ PN A PGAPG+
Sbjct: 184 GEQGPKGPNGAPGKPGAPGA 203
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGS 592
G +GP+ PN A PGAPG+
Sbjct: 184 GEQGPKGPNGAPGKPGAPGA 203
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPGSK 589
G GP P R GPGAPG K
Sbjct: 212 GETGPTGPPGYRGGPGAPGDK 232
>AC024211-4|AAP82631.1| 487|Caenorhabditis elegans Hypothetical
protein Y76B12C.6 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2
Query: 647 AVGPAPRMPPELDRGPPDL 591
A G AP+M PELD GPP L
Sbjct: 367 APGAAPQMIPELDPGPPRL 385
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 151 GNKGPSGPNGNPGAPGAPG 169
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 657 QGGSRGPRAPNAARTGPGAPG 595
QGGS+GP P GAPG
Sbjct: 163 QGGSQGPAGPRGPAGDAGAPG 183
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 651 GSRGPRAPNAARTGPGAPG 595
G++GP PN PGAPG
Sbjct: 184 GNKGPSGPNGNPGAPGAPG 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,406
Number of Sequences: 27780
Number of extensions: 277081
Number of successful extensions: 1171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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