Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30729
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59300.1 68416.m06610 expressed protein hypothetical protein ...    30   1.2  
At5g48550.1 68418.m06003 F-box family protein-related similar to...    28   4.8  

>At3g59300.1 68416.m06610 expressed protein hypothetical protein
           T2J13.20 - Arabidopsis thaliana, PIR:T46116
          Length = 459

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 569 PSREDIRLDPGAPGPVRAAFGARGPR 646
           P  E+I  DPGA  PV+A FG   PR
Sbjct: 166 PDDENILEDPGASNPVKAFFGMDVPR 191


>At5g48550.1 68418.m06003 F-box family protein-related similar to
           unknown protein (gb AAF19735.1); contains TIGRFAM
           TIGR01640 : F-box protein interaction domain
          Length = 427

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -3

Query: 643 WAPRPECRPNWTGGPRI*TNVLATRVGLHVSYHFNLLNRTHFTKSW 506
           W  R + R  W+   R   NV   +VG     H    NR H   +W
Sbjct: 246 WTLRDKARGEWSFDYRFDANVFRDKVGCFCRGHDWSTNRLHVVGAW 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,858,626
Number of Sequences: 28952
Number of extensions: 243510
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)