Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30727
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   2.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.2  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -1

Query: 698 INLGGFPKAKQSSK*LLSNPNLPIKKLPKNVHGPPINFSLKVSLRVYPIIISSRNF 531
           +NL GFP A Q  + L SN N+P             +    V    YP + S  NF
Sbjct: 145 MNLQGFPSAYQQHQYLQSNHNVPTNNSSSATSSTKPSVQ-SVGQASYPFLSSVSNF 199


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 309 KLLWFLLPNC*RFCANKLDY 368
           K +WFLL NC  F  N  D+
Sbjct: 381 KCVWFLLKNCDEFIENFSDF 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,162
Number of Sequences: 5004
Number of extensions: 52669
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)