Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30727
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778           29   3.7  
12_02_0587 + 20835741-20836115,20836183-20836218,20836409-208366...    28   6.5  

>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
          Length = 1104

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 264 INKLINIKFFRILMFKLLWF 323
           +NKL ++KF  ILMF++ WF
Sbjct: 554 LNKLHSLKFGTILMFEITWF 573


>12_02_0587 +
           20835741-20836115,20836183-20836218,20836409-20836617,
           20837402-20837498,20837977-20838046,20838224-20838281,
           20838914-20839734,20839780-20840121,20840224-20841227
          Length = 1003

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 401 CDVLANNPKLSVIEFICTEP 342
           CD   +NPKL  +EF+C  P
Sbjct: 93  CDAFDDNPKLLYLEFLCKIP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,609
Number of Sequences: 37544
Number of extensions: 276734
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)