Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30725
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   1e-21
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       66   3e-11
SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  58   8e-09
SB_16233| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   9.4  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   9.4  
SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)                   28   9.4  

>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score =  100 bits (239), Expect = 1e-21
 Identities = 42/71 (59%), Positives = 59/71 (83%)
 Frame = +3

Query: 231 QKGRESDQIEIMGEQDFTKLLQLEEEHVQRQCEEIIALKPDIVFTEKGVSDLAQHYLVKA 410
           +KG     +E+  + DF+++LQLEEE +++ C+E+IALKPD+V TEKG+SDLAQH+L+KA
Sbjct: 10  KKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDLVITEKGISDLAQHFLMKA 69

Query: 411 GITAIRRLRKT 443
            ITAIRR+RKT
Sbjct: 70  NITAIRRVRKT 80



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 45/116 (38%), Positives = 59/116 (50%)
 Frame = +1

Query: 205 ILLDCPLEYKKGESQTKLRLWVNRTSLNCYNWKRNMYSVNVKKLLHLNQILSLPKREFQI 384
           +LLDC LEYKKGESQT L L  +         +         +++ L   L + ++    
Sbjct: 1   MLLDCNLEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDLVITEKGISD 60

Query: 385 LHNITXXXXXXXXSADSVKRDNNRLARACGATIVNRN*GTQESDVGTGAGLFEIQE 552
           L                 K DNNR+ARACGATIVNR    +E D+GTGAGLFE+ +
Sbjct: 61  LAQHFLMKANITAIRRVRKTDNNRIARACGATIVNRTEELKEEDIGTGAGLFEVNK 116


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 25/62 (40%), Positives = 47/62 (75%)
 Frame = +1

Query: 64  EVDIKNYAKVEKIPGGTVEESRVLSGVMFNKDVTHPKMRRYIENPRIILLDCPLEYKKGE 243
           +++I+ Y K +KIPGG+ +E +++SGV+F K+V+H KM     NP+I++L C ++Y++ E
Sbjct: 563 DMNIRQYVKFKKIPGGSRDECKLISGVVFTKNVSHKKMSCVFNNPQILVLCCAIDYQRNE 622

Query: 244 SQ 249
           ++
Sbjct: 623 NR 624



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 288 LLQLEEEHVQRQCEEIIALKPDIVFTEKGVSDLAQHYLVKAGIT 419
           L+  E   ++     + AL+P+++  EK VS LAQ  L++ GI+
Sbjct: 631 LVLQERNFLKNFVSRVAALRPNVLLVEKTVSRLAQEMLLQHGIS 674


>SB_17755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +1

Query: 439 KRDNNRLARACGATIVNRN*GTQESDVGTGAGLFEIQE 552
           K DNNR+ARACGATIVNR    +E D+GTGAGLFE+ +
Sbjct: 136 KTDNNRIARACGATIVNRTEELKEEDIGTGAGLFEVNK 173



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 21/34 (61%), Positives = 31/34 (91%)
 Frame = +3

Query: 279 FTKLLQLEEEHVQRQCEEIIALKPDIVFTEKGVS 380
           F+++LQLEEE +++ C+E+IALKPD+V TEKG+S
Sbjct: 38  FSRVLQLEEEFIKKMCDEVIALKPDLVITEKGIS 71



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +3

Query: 378 SDLAQHYLVKAGITAIRRLRKT 443
           SDLAQH+L+KA ITAIRR+RKT
Sbjct: 116 SDLAQHFLMKANITAIRRVRKT 137


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 32/109 (29%), Positives = 66/109 (60%)
 Frame = +1

Query: 10  DIALDAVNTVTVNDNGRIEVDIKNYAKVEKIPGGTVEESRVLSGVMFNKDVTHPKMRRYI 189
           +IA+DAV  ++V D  R +VD +   KVE   GG ++++ ++ GV+ +KD++HP+M + +
Sbjct: 185 EIAVDAV--LSVADLERKDVDFE-LIKVEGKEGGKLDDTVLVKGVVVDKDMSHPQMPKVV 241

Query: 190 ENPRIILLDCPLEYKKGESQTKLRLWVNRTSLNCYNWKRNMYSVNVKKL 336
           ++ +I +L CP E  K +++ KL +           ++R  ++  +K++
Sbjct: 242 KDAKIAILTCPFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQV 290



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/65 (20%), Positives = 31/65 (47%)
 Frame = +3

Query: 234 KGRESDQIEIMGEQDFTKLLQLEEEHVQRQCEEIIALKPDIVFTEKGVSDLAQHYLVKAG 413
           K +   ++++   +D+ KL + E E      +++     ++   + G  D A H L++  
Sbjct: 257 KPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQVKDTGANLAICQWGFDDEANHLLLQNH 316

Query: 414 ITAIR 428
           + A+R
Sbjct: 317 LPAVR 321


>SB_16233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 502 TQESDVGTGAGLFEIQEDSEMKYFHFWSLQCQNPQGPGTNYYSV 633
           T  SD G GA L ++QED +++   + S   + P+    NY S+
Sbjct: 51  TDASDKGLGAVLSQMQEDGKLRVIAYASRSLRGPETNMENYSSM 94


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 652 RPLESHPRSNNWCQALGGSGTAVTKSGNISSPNLLESQ 539
           R LES  R ++WC   GGS  ++  +G  SSP+   SQ
Sbjct: 828 RTLESRMRPSSWC--CGGSTHSLASTGGESSPSQSASQ 863


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 520 GTGAGLFEIQEDSEMKYFHFWSLQCQNPQG 609
           G G G FE++ D     FH W+++ Q+P G
Sbjct: 872 GLGTGSFELRADGT---FHEWTIENQSPGG 898


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 580  WSL-QCQNPQGPGTNYYSVGGFL 645
            W L +CQ      T YYSVGGF+
Sbjct: 4691 WRLTRCQRHHQAATRYYSVGGFV 4713


>SB_33877| Best HMM Match : CDI (HMM E-Value=2.2e-12)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 452 TV*RGRVEQQLSTVTEELKNPMSVLELDCLRFKKIRR*NISTFGHCSARTPKGLAPIITP 631
           TV R + + ++STV    K P +    D LR KK +   +ST      RT    + II+ 
Sbjct: 134 TVARRKPKSRISTVRNLTKRPSTTPITDYLRQKKPKSKVVSTSKGMQLRTSNTRSSIISK 193

Query: 632 WVAF*RTSLKL 664
              F +   KL
Sbjct: 194 QTCFGQVFQKL 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,503,288
Number of Sequences: 59808
Number of extensions: 534975
Number of successful extensions: 1344
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)