Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30725
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.3  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.4  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 292 YNWKRNMYSVNVKKLLH-LNQILSLP 366
           YN+  N Y+ N KKL + +N I  +P
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIP 123


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 292 YNWKRNMYSVNVKKLLH-LNQILSLP 366
           YN+  N Y+ N KKL + +N I  +P
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIP 123


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 292 YNWKRNMYSVNVKKLLH-LNQILSLP 366
           YN+  N Y+ N KKL + +N I  +P
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIP 123


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 292 YNWKRNMYSVNVKKLLH-LNQILSLP 366
           YN+  N Y+ N KKL + +N I  +P
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIP 123


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 342 LKPDIVFTEKGVSDLAQH 395
           L PD++   KGV  +AQH
Sbjct: 443 LSPDVISALKGVRFIAQH 460


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 287 FSEVLFTHNLNLV*LSPFLYSSGQSNRI 204
           +   L +HNLN V    F+ S  Q+N +
Sbjct: 264 YYSALSSHNLNYVNTEQFVKSQYQANNV 291


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 164 VTSLLNITPLSTRDSSTVPP 105
           VTSLL +   +T+   ++PP
Sbjct: 250 VTSLLTLATQNTQSQQSLPP 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,926
Number of Sequences: 438
Number of extensions: 4961
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)