Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30723
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   4.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   4.0  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   4.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   5.2  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    26   6.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   6.9  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    26   6.9  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    25   9.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   9.2  

>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 435 MRRHSPRRTSERENRNLHMKNTA 367
           + R   RR +EREN+N  +K TA
Sbjct: 122 IERDKKRRAAERENKNSSVKETA 144


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 138 RQWSFADDNVQALCLLLSPEDRRTFDFDVKNI 233
           R WS   D   A+CL LS ED  +F   + +I
Sbjct: 237 RTWSTGRDIQIAVCLTLSDEDLASFAISLSSI 268


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 305 LPKSRSLLKRLHIIHILTQVV 367
           +P S SLL+++HII +LT ++
Sbjct: 776 VPSSLSLLRKVHIIPLLTHIL 796


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 459 PPPRHSLMLNAGIYTKY*QRPFFIL 533
           PPP  +++ N G+Y    +RP  +L
Sbjct: 499 PPPTFAILTNTGVYVVVHRRPIDVL 523


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 93  NKLEKAAACLEYFTTRQWS--FADDNVQALCLLLSPEDRRTFDFDVK 227
           NK    A C   +    W+    D  V +LC L +PE  + F+  VK
Sbjct: 98  NKCCPWAQCYGGYQFGDWAGQLGDGRVVSLCELTNPETGKRFEIQVK 144


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 42  DLVSRTTGNKPMMVRVQNKLEKAAACLEYFTTRQWSFADDNVQALCLLL 188
           D++    G+K ++V  +         LEYF T  W   D+++  LC  L
Sbjct: 675 DMIRACIGSKEILVPEETIKNILFTTLEYFLTNDW--VDNHLIILCASL 721


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 535 ECFRNRYKSTYVVTGVRQVRKV-QNRLTDFRVQMLKDE-NVFRL*KLKRERCSGQF 696
           +C  N  +STY +TGV   R +  N   D +    K E +   + ++ R+ C  +F
Sbjct: 16  KCINNSLRSTYAITGVNLTRGLATNSKVDPKTYAPKPEFSSIAVREMLRKSCLHEF 71


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -3

Query: 582 HTGNHVGRFVAITEAFLI*KMGAVSI*YIYRR*ASGYGEEAAARVSRSTMRRHSPRRTSE 403
           H+G     +  + +  L+ KMG  +   +Y+   +  GE+ A +V +       PR   +
Sbjct: 110 HSGQQFPVYKGLEQYTLLQKMGDGAFSNVYKAIHNRTGEKVAIKVVQRAQPNTDPRDPRK 169

Query: 402 RENRNLH 382
           R+    H
Sbjct: 170 RQGVESH 176


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 544 GSIPNIKNGRCQYLVYIPALSIRLWRGG 461
           G I N K+G   +  Y+P +   +W  G
Sbjct: 197 GRIANFKSGWDSHSAYVPGIGFLVWHTG 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,081
Number of Sequences: 5004
Number of extensions: 67567
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)