Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30723
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0071 + 40876925-40877195,40877575-40877603 35 0.083
07_03_0075 - 13096386-13096554,13096642-13096766,13096851-130971... 31 1.3
04_01_0373 - 4913283-4913669 31 1.3
08_02_0406 + 16813099-16813166,16813914-16814480,16814549-168145... 30 1.8
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 30 2.4
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 29 3.1
01_06_0752 + 31704071-31704787 29 5.4
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 28 7.2
05_06_0211 + 26401495-26402224,26402932-26403014,26403295-264033... 28 7.2
02_04_0406 + 22641880-22641964,22642047-22642276 28 7.2
01_01_1024 + 8083372-8083758,8083970-8084149,8084261-8084590,808... 28 7.2
11_04_0355 + 16705281-16706006 28 9.5
08_02_0972 - 23187294-23188034 28 9.5
06_03_0969 - 26413534-26413594,26415020-26415318 28 9.5
04_02_0010 + 8486571-8486848,8489354-8489456,8490139-8490303,849... 28 9.5
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 28 9.5
01_06_0154 - 27049218-27049517,27049679-27050107 28 9.5
>01_07_0071 + 40876925-40877195,40877575-40877603
Length = 99
Score = 34.7 bits (76), Expect = 0.083
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = -1
Query: 443 GPRCAATVRAGPPS-GRTGIST*RIR-PLLELVYGLCVISSI-ATGT 312
G R ATV GPPS + IR P ++LVYG+C +S+ ATGT
Sbjct: 14 GRRALATVLCGPPSCALPAVMVVEIRDPRVKLVYGMCPWTSVLATGT 60
>07_03_0075 -
13096386-13096554,13096642-13096766,13096851-13097117,
13097506-13097587,13097956-13098172,13098260-13098360,
13098425-13098627,13099261-13099334,13100246-13100429
Length = 473
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 129 FTTRQWSFADDNVQALCLLLSPEDRRTFDFDVKNIDWDAYIEPT 260
FT + F D +Q L +++ DR ++K I+WD Y T
Sbjct: 412 FTISKTRFDDSKMQNLMGMVTERDRELIPCNIKFINWDKYFMET 455
>04_01_0373 - 4913283-4913669
Length = 128
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = +2
Query: 8 ADAASGTGCADGPGLQDHWQQAHDGQGSK*VGEGGRLSGVLHHAPVVVCGRQRAGALLAP 187
A SG+G GP + WQ H G G GEGG G + A VV +RA + P
Sbjct: 6 ASGRSGSG-RSGPVMDGRWQ-THKGGGGDGSGEGG--GGEVEVAVVVQMATERAAVIGDP 61
>08_02_0406 +
16813099-16813166,16813914-16814480,16814549-16814595,
16814787-16815484
Length = 459
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 61 LATSP*WSGFKISWRRRPPVWSTSPRASGRLRTTTCRRSACSC 189
L + P W GF + W RRP +SP ++ R RR A SC
Sbjct: 418 LESPPSWMGF-VRWFRRPTALVSSPCSTSSARVAQLRR-AYSC 458
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 129 FTTRQWSFADDNVQALCLLLSPEDRRT-----FDFDVKNIDWDAY 248
+T + F D N + L + + ++ + FDFD K+IDWD Y
Sbjct: 433 YTLFKGCFDDINTEKLRITMRKQEDKNDGGYCFDFDPKSIDWDEY 477
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 189 SPEDRRTFDFDVKNIDWDAY 248
+P+D F+FD K IDW+ Y
Sbjct: 474 NPQDDEMFNFDPKTIDWEDY 493
>01_06_0752 + 31704071-31704787
Length = 238
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = -1
Query: 467 RRRLRESAGPRCAATVRAGPPSGRTGIST*RIRPLLELVYGLCVISSIATGT 312
RR R +A ATV AG P + G+ I L YG A GT
Sbjct: 63 RRNRRRAAEAAALATVNAGAPPKQVGLDPSAIAALPTAAYGKVAGGDAAGGT 114
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 122 QTGGRLLQLILNPDHHGLVASGPGD 48
QTGG++ QL+L D L + GP D
Sbjct: 118 QTGGQMAQLVLKADKMQLYSPGPRD 142
>05_06_0211 +
26401495-26402224,26402932-26403014,26403295-26403369,
26403442-26403513,26403684-26403764,26403946-26404043,
26404694-26404819,26404931-26404979,26405352-26405547,
26406475-26406491,26406786-26406839,26406845-26407036
Length = 590
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 11 DAASGTGCADGPGLQDHWQQAHDGQGSK*VGEGGRLSGVLHHAP 142
DAA+G G G G + + G+GS G GGR GV+++ P
Sbjct: 114 DAAAGGGGGGGGGYVEE-DEEDKGEGSAGAGAGGR--GVVYYDP 154
>02_04_0406 + 22641880-22641964,22642047-22642276
Length = 104
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 26 TGCADGPGLQDHWQQAHDGQGSK*VGEGGRLSGVLHH 136
T G G+QD W H G G G GG G HH
Sbjct: 36 TESGGGAGVQD-WHDDHGGGGHHGGGGGGYPGGQCHH 71
>01_01_1024 +
8083372-8083758,8083970-8084149,8084261-8084590,
8084679-8084792,8084942-8085682
Length = 583
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 483 ASGYGEEAAARVSRSTMRRHSPRRTSERENRN 388
+SG G EAA S S+ SPRR+S N++
Sbjct: 208 SSGAGGEAAEEPSNSSTEAGSPRRSSSTGNKD 239
>11_04_0355 + 16705281-16706006
Length = 241
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 62 WQQAHDGQGSK*VGEGGRLSGVLHHAPVVVCG 157
W QA G+G G GG V HHAP + CG
Sbjct: 64 WGQAEVGKG----GGGGGSGRVGHHAPELGCG 91
>08_02_0972 - 23187294-23188034
Length = 246
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 161 VVRKRPLARGEVLQTGGRLLQLILNPDHHGLV 66
++ P A+ E++ T +L QL PDHHG+V
Sbjct: 5 MLNSNPEAQLELMNTMLQLEQLSAFPDHHGMV 36
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 106 RRPPVWSTSPRASGRLRTTTCRRSACSCP 192
RRPP + P+A R + S C CP
Sbjct: 78 RRPPAMARGPQAQARRPPAMAQGSFCHCP 106
>04_02_0010 +
8486571-8486848,8489354-8489456,8490139-8490303,
8490654-8490788
Length = 226
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 69 CCQWSWRPGPSAQPVP 22
CC W RPG + PVP
Sbjct: 18 CCAWGCRPGAAQVPVP 33
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 5 DADAASGTGCADGPGLQDH--WQQAHDGQGSK*VGEGGRLSGV 127
DA A G+ ADG +D W+ A G G++ EGG + GV
Sbjct: 414 DAAEAGGSAEADGDARRDSGPWRSAEAGGGAE--AEGGVMDGV 454
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 162 NVQALCLLLSPEDRRTFDFDVKNIDWD-AYIEPTCSGSGGSCSKIAPRRCPSPG 320
+V L +P RR + V + WD + ++P+C+G APR PS G
Sbjct: 60 SVDCTLSLGTPSTRRA-EAAVAGLPWDQSSLQPSCNGRQEMSGAAAPRTEPSGG 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,506,164
Number of Sequences: 37544
Number of extensions: 561277
Number of successful extensions: 1940
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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