Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30723
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)               51   9e-07
SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)          28   7.3  
SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)                     28   7.3  
SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 29/83 (34%), Positives = 43/83 (51%)
 Frame = +3

Query: 6   TLMQHRAPAVLMDLVSRTTGNKPMMVRVQNKLEKAAACLEYFTTRQWSFADDNVQALCLL 185
           T + HR PA++ D++S   G KP M R+  KL+KA   ++ FT+R+W             
Sbjct: 283 TYISHRIPALIADMLSIFIGQKPKMNRLYRKLQKATDVMKVFTSREW------------- 329

Query: 186 LSPEDRRTFDFDVKNIDWDAYIE 254
                 + F FDV+ IDW+ Y E
Sbjct: 330 ------KEFGFDVRVIDWNKYFE 346


>SB_41626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 120 LEYFTTRQWSFADD--NVQALCLLLSPEDRRTFDFDVKNID 236
           +E  T + +S   D  N+   C +LSPEDR TF   VK +D
Sbjct: 608 IESLTDKIYSQKSDVYNIMTDCWVLSPEDRPTFTELVKKLD 648


>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
          Length = 376

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 627 ANAQRRERFQALKTETGTMFRSIRGADVPELNNWVKKKVFETE 755
           A ++R E+F  +K E   +F     A+ P+L   + K +++T+
Sbjct: 140 AKSERGEKFAEIKEEVKALFTEEDLAENPDLAELINKYIYKTQ 182


>SB_9766| Best HMM Match : DUF291 (HMM E-Value=4.3)
          Length = 604

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 274 EVLVQR*PRDAAQVPVAIEEITHNPYTNSSSGRILHVEIPVLPLG 408
           E+L +   R    VP   +  T +P   S   R++ +EIP LPLG
Sbjct: 143 EILPRSATRKDQSVPPK-DSTTADPPAASDDSRLIDLEIPTLPLG 186


>SB_40017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 KSRSLLKRLHIIHILTQVVAVFFMWRF 391
           K+RSL+KRL I+H L +     F  RF
Sbjct: 325 KARSLVKRLKILHSLNETKKTCFTLRF 351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,262,651
Number of Sequences: 59808
Number of extensions: 557546
Number of successful extensions: 1445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)