Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30723
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...    64   1e-10
Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine deami...    29   3.7  
AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA ...    29   3.7  
U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    28   8.6  
AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical...    28   8.6  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 25/80 (31%), Positives = 48/80 (60%)
 Frame = +3

Query: 12  MQHRAPAVLMDLVSRTTGNKPMMVRVQNKLEKAAACLEYFTTRQWSFADDNVQALCLLLS 191
           ++H  PA + D+ +R  G +   V++ +K+ K    L +FTTR WSF    +      ++
Sbjct: 356 IKHHIPAAISDISARLIGKRKNNVKLYSKVWKMIETLHFFTTRGWSFNARGLPEFFEKMT 415

Query: 192 PEDRRTFDFDVKNIDWDAYI 251
           P D++ ++FDV+ +DW++Y+
Sbjct: 416 PADQKEYNFDVRQVDWNSYL 435



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +2

Query: 257 YVLGIRRFLFKDSPETLPKSRSLLKRLHI 343
           YV+GI++FL K++ E L +SR+ L ++ I
Sbjct: 438 YVMGIKKFLLKENLENLNRSRAHLLKMRI 466


>Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical
           protein C34C12.2 protein.
          Length = 679

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 192 PEDRRTFD-FDVKNIDWDAY---IEPTCSGSGGSCSKIAPRRCPSP 317
           PE+ +  D FD+ +I    Y   +EP  S S GS S  APR  P P
Sbjct: 541 PENSKKSDHFDMPDISSTLYRSRVEPISSSSSGSTSTSAPRYVPKP 586


>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 342 MCNLFNSDRDLGSVSGLSLNKN 277
           +  LFN  +++G VSGL++NKN
Sbjct: 49  LIGLFNPSKEIGQVSGLAVNKN 70


>U00037-1|AAA50661.2|  495|Caenorhabditis elegans Adenosine
           deaminase that acts onrna protein 2 protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 218 EVEGPPVFGGQEQAERLHVVVRKRPLARGEVLQTGGRLLQLILNPDHHGLVA 63
           E E P  F G    ER+  +     L R  VL   G +L   ++P ++  +A
Sbjct: 284 EFEAPQTFDGIMMGERMRTMSCSDKLLRANVLGVQGAILSHFIDPIYYSSIA 335


>AF051275-1|AAC25097.1|  495|Caenorhabditis elegans putative RNA
           adenosine deaminase protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 218 EVEGPPVFGGQEQAERLHVVVRKRPLARGEVLQTGGRLLQLILNPDHHGLVA 63
           E E P  F G    ER+  +     L R  VL   G +L   ++P ++  +A
Sbjct: 284 EFEAPQTFDGIMMGERMRTMSCSDKLLRANVLGVQGAILSHFIDPIYYSSIA 335


>U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical
           protein F25B4.5 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 505 LVYIPALSIRLWRGGGCASQQVHDAPPQSAQDLRAGEQESPHEEY 371
           ++ IP LSI LW G     + + + PP+S +DL A   E    EY
Sbjct: 160 IISIP-LSIDLWLGYTADVKNIKNFPPESLRDLYARAIEIAGLEY 203


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 512 TAPIFYIRNASVIATNLPTWL-PVCVRF-EKFRTD*LISACKCSK 640
           T PIFY+R    +A  L +++ P C+ F  +     +I   KCSK
Sbjct: 256 TGPIFYMRALYPVANGLLSYINPFCILFLNRDLARQVIKTIKCSK 300


>AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical
           protein Y119C1B.1 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 498 IYRR*ASGYGEEAAARV-SRSTMRRHSPRRTSERENRNLHMKN 373
           I+RR +S   +++   + SR +M+    RRTSERE ++   +N
Sbjct: 37  IFRRRSSSNSKKSKKSMKSRKSMKSKRDRRTSERERKSSRDRN 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,091
Number of Sequences: 27780
Number of extensions: 410876
Number of successful extensions: 1220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)