Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30723
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56700.1 68416.m06307 male sterility protein, putative simila... 42 5e-04
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 34 0.12
At1g64570.1 68414.m07319 expressed protein 33 0.16
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 31 0.85
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 29 2.6
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 29 2.6
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 29 4.5
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 29 4.5
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 28 7.9
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin... 28 7.9
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 28 7.9
At1g15860.1 68414.m01903 expressed protein 28 7.9
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +3
Query: 84 RVQNKLEKAAACLEYFTTRQWSFADDNVQALCLLLSPEDRRTFDFDVKNIDWDAYI 251
R N A E +T Q F + N +L +S E+++TF FD+K IDW+ YI
Sbjct: 453 RKLNYFVSLAKTYEPYTFFQARFDNTNTTSLIQEMSMEEKKTFGFDIKGIDWEHYI 508
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 111 AACLEYFTTRQWSFADDNVQALCLLLSPEDRRTFDFDVKNIDWDAYI 251
A E +T F + N Q L +S +++R F FDV +I+W YI
Sbjct: 553 ATIYEPYTFYGGRFDNSNTQRLMENMSEDEKREFGFDVGSINWTDYI 599
>At1g64570.1 68414.m07319 expressed protein
Length = 1239
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 334 ITHNPYTNSSSGRILHVEIPVLPLGGPARTVAAHRGPADSRSRLL 468
I H + +GR+L +P+LP+ P R V+A A S +R +
Sbjct: 262 IHHKNNSPEQAGRLLRPLVPILPIAPPGRRVSATEAVASSENRTI 306
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 627 ANAQRRERFQALKTETGTMFRSIRGADVPELNNWVKKKVFETENL 761
ANA + + Q KT+T TM S G+ + EL++ V++K E + L
Sbjct: 268 ANANAQVKTQTHKTQTETMIHSF-GSKISELHDSVQRKRIELQRL 311
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 207 TFDFDVKNIDWDAYIEPT 260
+F+FD K+IDWD YI T
Sbjct: 462 SFEFDPKSIDWDNYITNT 479
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 663 LKPENVLVFEHLHAEISQSVLNFSNLTHTGNHVGRFVAITEAFL 532
+K N+L+ EHLHA+++ L+ S HV VA T +L
Sbjct: 699 VKTTNILLNEHLHAKLADFGLSRSFPIEGETHVSTVVAGTPGYL 742
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +3
Query: 150 FADDNVQALCLLLSPEDRRT-----FDFDVKNIDWDAYI 251
F D N + LC ED R FDFD K I W Y+
Sbjct: 396 FDDRNTKNLCAKQKEEDNRNSENFMFDFDPKIIKWKDYL 434
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -2
Query: 544 GSIPNIKN---GRCQYLVYIPALSIRLWRGGGCASQQVHDAPP 425
GS+P ++N G+ Q L +PA S+ L R G +S V PP
Sbjct: 118 GSLPALENISFGQLQALSTVPADSLDLERSDGSSSAYVISPPP 160
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 663 LKPENVLVFEHLHAEISQSVLNFSNLTHTGNHVGRFVAITEAFL 532
+K N+L+ EH HA+++ L+ S +HV VA T +L
Sbjct: 691 VKTTNILLDEHFHAKLADFGLSRSFPVGVESHVSTNVAGTPGYL 734
>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
phosphoesterase family protein similar to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
PF00149: Calcineurin-like phosphoesterase
Length = 1006
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 452 ESAGPRCAATVRAGPPSGRTGIST*RIRPLLELVYGLCVISSIATGT 312
+ GPRC T+ A P G G S+ I P L L G + + GT
Sbjct: 89 DGPGPRCGHTLTAVPAVGEEGTSS-YIGPRLILFGGATALEGNSGGT 134
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 699 HELTGTSFPFQFLKPENVLVFEHLHAEIS 613
H L SF + LKP N+L+ + +HA+++
Sbjct: 665 HTLAHQSFIHRDLKPSNILLGDDMHAKVA 693
>At1g15860.1 68414.m01903 expressed protein
Length = 225
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 63 GNKPMMVRVQNKLEKAAACLEYFTTRQWSFADDNVQALCLLLSPEDRRTFDFD 221
G K + NKL+KA LE R +FAD A C L+ E +++ D +
Sbjct: 96 GLKALRADTINKLKKALPELE--KERPSNFADFYAYAFCYCLTEEKQKSIDIE 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,895
Number of Sequences: 28952
Number of extensions: 395306
Number of successful extensions: 1154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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