Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30722
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    95   7e-21
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   2.0  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    26   6.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.2  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   8.2  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXX 415
           L +  +WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET    
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEK 105

Query: 416 XXXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLF 595
                                 +   +++G     +    +KA  V+IA DVD +EL +F
Sbjct: 106 KQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVF 165

Query: 596 LPTLFRKIG 622
           LP L +K+G
Sbjct: 166 LPALCKKMG 174



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSISASSARRLYFSVV*KCP 320
           NPLF  RP++F IGQ IQP RDLSRFV  P       RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = -2

Query: 326 SEGALSDDAEVQPSG------AGCGYTWAIYKSGQVPSWLNALTNGKVLWPLLEERIHDL 165
           S+  L D     PSG      AG G+  AI+ +GQ+  + N  ++ KV+ PL+   I   
Sbjct: 147 SDKVLQDGFRSFPSGHTSFSFAGLGFL-AIFLAGQLKMFRNKTSSWKVVVPLVPLSIASW 205

Query: 164 LGLN 153
           +GL+
Sbjct: 206 IGLS 209


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 641 FKGENSPPSGATFYNRQNIAPWLRSL 718
           F+G N P +     + Q+ APW  S+
Sbjct: 149 FRGPNGPAAAVAAQHSQHFAPWYGSI 174


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 287 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 388
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 271 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 360
           PHP      SA S ++P   P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 469 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 299
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,103
Number of Sequences: 5004
Number of extensions: 58157
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)