Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30722
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 98 5e-21
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 98 5e-21
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 75 6e-14
02_05_0979 + 33268294-33269595 32 0.53
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 0.92
04_03_0964 - 21290107-21290667,21290780-21291130,21291230-212914... 29 2.8
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 29 4.9
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 28 6.5
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 28 6.5
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.5
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212... 28 8.6
07_01_0039 - 306384-306551,306645-306749,306845-306949,307030-30... 28 8.6
03_06_0778 - 36188675-36188922,36189154-36189214,36189531-361896... 28 8.6
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 98.3 bits (234), Expect = 5e-21
Identities = 52/127 (40%), Positives = 71/127 (55%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 102
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
+ +++G + KA VVIAHDVD +EL ++L
Sbjct: 103 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWL 162
Query: 599 PTLFRKI 619
P L RK+
Sbjct: 163 PALCRKM 169
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSI 269
NPLFEKRPK F IG + P +DL RFV P +
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 53
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 98.3 bits (234), Expect = 5e-21
Identities = 52/127 (40%), Positives = 71/127 (55%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + +WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAA 86
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
+ +++G + KA VVIAHDVD +EL ++L
Sbjct: 87 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWL 146
Query: 599 PTLFRKI 619
P L RK+
Sbjct: 147 PALCRKM 153
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGPSI 269
NPLFEKRPK F IG + P +DL RFV P +
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKV 37
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 74.9 bits (176), Expect = 6e-14
Identities = 46/127 (36%), Positives = 67/127 (52%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA---- 100
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
+ +++G + KA VVIAHDVD +EL ++L
Sbjct: 101 -------------EGKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWL 147
Query: 599 PTLFRKI 619
P L RK+
Sbjct: 148 PALCRKM 154
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKRPK F IG + P +DL RFV P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWP 52
>02_05_0979 + 33268294-33269595
Length = 433
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 654 IPRPPVQLFTTARTLPHG 707
IPRPPV+ TAR LPHG
Sbjct: 99 IPRPPVEEIMTARHLPHG 116
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 271 PHPAPEGCTSASSESAPSDQP 333
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>04_03_0964 -
21290107-21290667,21290780-21291130,21291230-21291411,
21291505-21291631,21291956-21292168,21292627-21292755,
21292891-21293616
Length = 762
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 582 SWVSFCQRYSVKLGVP*LHFSKGKIP 659
+WV FC+RY V + P +FS P
Sbjct: 199 AWVPFCRRYGVAVRAPFRYFSSSSSP 224
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 549 LWSSLMMLIPLSWVSFCQRYSVKLGVP*LHFSKGKI 656
LW + + W+ FC+RY+++ P +FS+ K+
Sbjct: 27 LWEA--SIFAKKWLPFCKRYNIEPRSPAAYFSESKV 60
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 511 CCPESDGVGPLWWRLIFLGNLSFSSFPQ 428
CC V WW L+FL N +SFPQ
Sbjct: 70 CCWLVGCVCSAWWLLLFLYNAMPASFPQ 97
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 585 WVSFCQRYSVKLGVP*LHFSKG 650
W+ FC+R+ V+ P L+F++G
Sbjct: 188 WIPFCRRHGVEPRAPELYFARG 209
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 219 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 127
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>11_06_0435 -
23519908-23520054,23520398-23520514,23521152-23521263,
23521491-23521540,23522001-23522129,23522289-23522375,
23523635-23523679,23523817-23523887,23523925-23524005,
23524547-23524602,23526489-23526595
Length = 333
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 492 PSDSG-QHSHQAGREEERRTLWSSLMMLIPLSWVS 593
P+DSG Q GR EE WS + L W+S
Sbjct: 4 PTDSGGQAKVGGGRSEEEDDRWSGYCRSLSLRWIS 38
>07_01_0039 -
306384-306551,306645-306749,306845-306949,307030-307111,
307457-307656,307754-307915,308043-308152,308255-308594,
308675-308749,308823-309032,309140-309343,309443-309562,
309643-309752,309832-309976,310716-310943
Length = 787
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 618 LGVP*LHFSKGKIPRPPVQLFTTARTL 698
+G P LH KG IPR Q+F T++ L
Sbjct: 532 MGNPELHDQKGLIPRSLEQIFQTSQAL 558
>03_06_0778 -
36188675-36188922,36189154-36189214,36189531-36189635,
36189731-36189835,36189916-36189997,36190337-36190536,
36190635-36190796,36190926-36191035,36191133-36191256,
36191408-36191674
Length = 487
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 618 LGVP*LHFSKGKIPRPPVQLFTTARTL 698
+G P LH KG IPR Q+F T++ L
Sbjct: 185 MGNPELHDQKGLIPRSLEQIFQTSQAL 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,723,820
Number of Sequences: 37544
Number of extensions: 445587
Number of successful extensions: 1411
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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