Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30722
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 9e-24
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 52 4e-07
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 29 2.9
SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05) 29 5.0
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 28 6.6
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_7998| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 107 bits (257), Expect = 9e-24
Identities = 52/127 (40%), Positives = 73/127 (57%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
L + RWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 51 LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
+ +++G S +KA VVIAHDVD +E+ ++L
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWL 170
Query: 599 PTLFRKI 619
P L RK+
Sbjct: 171 PALCRKM 177
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPL EKRP+NF IG IQP RDLSRFV P
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWP 58
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +2
Query: 371 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHF 550
LFK+L KYRPET + +++G S +KA
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 551 VVIAHDVDSLELGLFLPTLFRKI 619
VVIAHDVD +E+ ++LP L RK+
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKM 86
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 502 ESDGVGPLWWRLIFLGNLSFSSFPQPLFPG 413
E D P WW ++F+G + FS L+PG
Sbjct: 50 EYDNPLPKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_20775| Best HMM Match : Somatomedin_B (HMM E-Value=7.7e-05)
Length = 375
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 279 WMRIYLGHLQIWTSPELAECPDQW 208
W +Y GHL++W ++ CP+ W
Sbjct: 256 WKCVYGGHLRLWL---ISSCPESW 276
>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 215 SGHSANSGLVQICRWPKYIRIQRQKAVL 298
SGH+ N L Q +W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 215 SGHSANSGLVQICRWPKYIRIQRQKAVL 298
SGH+ N L Q +W KYI ++ K L
Sbjct: 4 SGHAQNQRLSQSIQWNKYINCKKNKTNL 31
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 531 EEERRTLWSSLMMLIPLSWVSFCQRYSVKL 620
EEE W P SW CQ+Y K+
Sbjct: 173 EEEDEQKWQPKKSSAPRSWCCVCQKYKTKI 202
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 531 EEERRTLWSSLMMLIPLSWVSFCQRYSVKL 620
EEE W P SW CQ+Y K+
Sbjct: 400 EEEDEQKWQPKKSSAPRSWCCVCQKYKTKI 429
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 215 SGHSANSGLVQICRWPKYIRIQRQKAVL 298
SGH+ N L Q +W KYI ++ K L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573
>SB_7998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 531 EEERRTLWSSLMMLIPLSWVSFCQRYSVKL 620
EEE W P SW CQ+Y K+
Sbjct: 14 EEEDEQKWQPKKSSAPRSWCCVCQKYKTKI 43
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 295 TSASSESAPSDQPIYPDTG 351
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,436,718
Number of Sequences: 59808
Number of extensions: 453394
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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