Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30722
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 108 3e-24
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 97 1e-20
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 80 2e-15
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 59 3e-09
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.029
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical... 29 3.3
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical... 29 3.3
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 5.8
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 5.8
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 28 5.8
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 28 5.8
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 108 bits (260), Expect = 3e-24
Identities = 58/140 (41%), Positives = 75/140 (53%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
R NT+R G R+A V+IAHDV+ LE+ L L
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 171
Query: 599 PTLFRKIGGTIIAFFKGENS 658
P L RK A KG+ S
Sbjct: 172 PALCRKY-NVPYAIIKGKAS 190
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 97.1 bits (231), Expect = 1e-20
Identities = 58/140 (41%), Positives = 75/140 (53%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES---- 107
Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
R NT+R G R+A V+IAHDV+ LE+ L L
Sbjct: 108 ----------------TEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHL 151
Query: 599 PTLFRKIGGTIIAFFKGENS 658
P L RK A KG+ S
Sbjct: 152 PALCRKY-NVPYAIIKGKAS 170
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 59
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 79.8 bits (188), Expect = 2e-15
Identities = 33/56 (58%), Positives = 44/56 (78%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 406
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 352
+ + +WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP 263
NPLFEKR +NF IGQ IQP +D++RFV P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWP 162
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 448 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 329
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
protein Y105E8A.26b protein.
Length = 1133
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 468 SLHQRGPTPSDSGQHSHQAGREEERRTLWSSLMMLIPLSWVSFCQRYSVKLGVP 629
S+ + PTP + Q EEE + S ++ L V C++ +V+L +P
Sbjct: 973 SIASKSPTPRLDENENGQKSEEEEPTVVEESTALIGSLGGVIRCEKSNVELRIP 1026
>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
protein Y105E8A.26a protein.
Length = 1172
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 468 SLHQRGPTPSDSGQHSHQAGREEERRTLWSSLMMLIPLSWVSFCQRYSVKLGVP 629
S+ + PTP + Q EEE + S ++ L V C++ +V+L +P
Sbjct: 1012 SIASKSPTPRLDENENGQKSEEEEPTVVEESTALIGSLGGVIRCEKSNVELRIP 1065
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 199 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 333
+T P+ R S DL A VY P P PEG T QP
Sbjct: 66 KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 199 RTLPLVRAFSQLGTCPDL*MAQVY-PHPAPEGCTSASSESAPSDQP 333
+T P+ R S DL A VY P P PEG T QP
Sbjct: 66 KTEPVARQVSTAQMKRDLEQAAVYVPTPIPEGSTQPQQRQQQQSQP 111
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 512 QSPSWSRRRKA-HFVVIAHDVDSL 580
+ P+ +RRKA HF+V+ HD+D L
Sbjct: 193 RGPNSKKRRKASHFLVVHHDLDRL 216
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 512 QSPSWSRRRKA-HFVVIAHDVDSL 580
+ P+ +RRKA HF+V+ HD+D L
Sbjct: 193 RGPNSKKRRKASHFLVVHHDLDRL 216
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 321 LRSTNLPRHWTRLQLRA 371
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,489,325
Number of Sequences: 27780
Number of extensions: 337943
Number of successful extensions: 899
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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