Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30722
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   100   1e-21
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            99   1e-21
At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative...    29   2.3  
At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative...    29   2.3  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   4.1  
At2g27140.1 68415.m03261 heat shock family protein contains simi...    28   7.2  
At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa...    27   9.5  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   9.5  
At2g32540.1 68415.m03975 cellulose synthase family protein simil...    27   9.5  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  100 bits (239), Expect = 1e-21
 Identities = 54/127 (42%), Positives = 71/127 (55%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
           L +  +WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE     
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAA 100

Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
                                +   +++G         + KA  VVIAHDVD +EL ++L
Sbjct: 101 KKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWL 160

Query: 599 PTLFRKI 619
           P L RK+
Sbjct: 161 PALCRKM 167



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP-SISASSARRL 293
           NPLFE+RPK F IG  + P +DLSR++  P SI     +R+
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =   99 bits (238), Expect = 1e-21
 Identities = 53/127 (41%), Positives = 71/127 (55%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 418
           L +  +WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE     
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAA 101

Query: 419 XXXXXXXXXXXXXXXXXXXXXRANTIRFGTTQSPSWSRRRKAHFVVIAHDVDSLELGLFL 598
                                +   +++G         + KA  VVIAHDVD +EL ++L
Sbjct: 102 KKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWL 161

Query: 599 PTLFRKI 619
           P L RK+
Sbjct: 162 PALCRKM 168



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP-SISASSARRL 293
           NPLFE+RPK F IG  + P +DLSR++  P SI     +R+
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61


>At1g18020.1 68414.m02229 12-oxophytodienoate reductase, putative
           similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
          Length = 269

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 558 SLMMLIPLSWVSFCQRYSVKLGVP*LHFSKGKIPRPPVQLFTTARTLPHGL 710
           S+ +L+P     F   + V L       S G IP+P  +L+ T RT P GL
Sbjct: 6   SIPLLMPYKMGPFNLSHRVVLAPLTRSRSYGNIPQPNAKLYYTQRTTPGGL 56


>At1g17990.1 68414.m02226 12-oxophytodienoate reductase, putative
           similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
          Length = 269

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 558 SLMMLIPLSWVSFCQRYSVKLGVP*LHFSKGKIPRPPVQLFTTARTLPHGL 710
           S+ +L+P     F   + V L       S G IP+P  +L+ T RT P GL
Sbjct: 6   SIPLLMPYKMGPFNLSHRVVLAPLTRSRSYGNIPQPNAKLYYTQRTTPGGL 56


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 499  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 341
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At2g27140.1 68415.m03261 heat shock family protein contains
           similarity to Swiss-Prot:P27397 18.0 kDa class I heat
           shock protein [Daucus carota]
          Length = 224

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 687 RL*KVAPEGGEFSPLKNAIMVPPILRNNVGRKRPSSRE 574
           RL +  P G + SP+  A   PP+ + N     PS++E
Sbjct: 97  RLPRTEPMGKQPSPIGTATKPPPVPKENPNLPSPSAKE 134


>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           SP|P40345 Phospholipid:diacylglycerol acyltransferase
           (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 671

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 511 CCPESDGVGPLWWRLIFLGNLSFSSFPQ 428
           CC     V   WW L+FL N   +SFPQ
Sbjct: 54  CCWFIGCVCVTWWFLLFLYNAMPASFPQ 81


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 460 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 365
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


>At2g32540.1 68415.m03975 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit from Arabidopsis
           thaliana [gi:5230423], cellulose synthase-5 from Zea
           mays [gi:9622882]
          Length = 755

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 585 WVSFCQRYSVKLGVP*LHF 641
           WV FC++Y+V++  P ++F
Sbjct: 156 WVPFCKKYNVRVRAPFMYF 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,140
Number of Sequences: 28952
Number of extensions: 330925
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)