Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6RTI0 Cluster: Predicted protein; n=1; Botryotinia fuc...    38   0.19 
UniRef50_A6EMN0 Cluster: Putative assembly or transport protein ...    35   2.3  
UniRef50_Q23A19 Cluster: Putative uncharacterized protein; n=1; ...    35   2.3  
UniRef50_UPI0000F2EAD3 Cluster: PREDICTED: hypothetical protein;...    34   3.0  
UniRef50_A3MUM1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  

>UniRef50_A6RTI0 Cluster: Predicted protein; n=1; Botryotinia
           fuckeliana B05.10|Rep: Predicted protein - Botryotinia
           fuckeliana B05.10
          Length = 1081

 Score = 38.3 bits (85), Expect = 0.19
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +2

Query: 359 INRPQDRYQRGTRQSYLSIRPILPSNDTENCSHTISSR*PTNQFLSQTLNFLKQRDFSYQ 538
           IN P  +YQ G +Q+   +RP +  ND E    TI S   +   + +  + L+ + F  +
Sbjct: 344 INAPSVKYQVGCKQANNILRPAMQINDIEVKDKTIDSHNESRNEVPRHAHVLQAKQFQPE 403

Query: 539 ITSQNISPSIT 571
            TS N+ P+I+
Sbjct: 404 -TSHNLEPNIS 413


>UniRef50_A6EMN0 Cluster: Putative assembly or transport protein for
           curli synthesis; n=1; unidentified eubacterium
           SCB49|Rep: Putative assembly or transport protein for
           curli synthesis - unidentified eubacterium SCB49
          Length = 458

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 321 RAFLQNTGACVGLSIVRKTVISEGRDKAIFRFAQFYR 431
           RA   +TG  +    V KT++S+G D  IFRF +F R
Sbjct: 183 RAISTSTGEVLKTVYVSKTILSQGADAGIFRFVKFER 219


>UniRef50_Q23A19 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 955

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 431 SNDTENCSHTISSR*PTNQFLSQTLNFLKQRDFSYQITSQNISP---SITSLYSGNPHKS 601
           + DT+NCS T  S    NQ+ S  +N  K+ D   Q   QNIS    S  +L + NPH +
Sbjct: 692 NEDTQNCSQTEYSIYQNNQYASLGVN--KKDDTLNQTQGQNISNINFSFENLNNNNPHGA 749

Query: 602 I 604
           I
Sbjct: 750 I 750


>UniRef50_UPI0000F2EAD3 Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 260

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 290 PPDPTTGLQ-PLFIWAQSLE*AQNGDGHSSLPRSGPAAPWRLTTAARYTYSNYPL 129
           PP P  G Q P FIW  +L   Q    H     SGPAAP       +  +S  PL
Sbjct: 101 PPPPKRGEQLPPFIWGPNLN-GQQRRSHRRALNSGPAAPAEAPWLRKLMFSRAPL 154


>UniRef50_A3MUM1 Cluster: Putative uncharacterized protein; n=1;
           Pyrobaculum calidifontis JCM 11548|Rep: Putative
           uncharacterized protein - Pyrobaculum calidifontis
           (strain JCM 11548 / VA1)
          Length = 273

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 187 GPDLGSELWPSPFCAYSSDCAHMKSGWRPVVGSGGIVYSFGGPVHAPSYKIPVPVLDYQ 363
           G   G+ +W   + A++SD A     W P+ G  G+ +    P    +Y  P P LD Q
Sbjct: 147 GARAGAYVWGVMWTAWASDVALEAPPWGPISGIWGLTWRGHKPKPLYTYAYPPPYLDAQ 205


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 780,391,538
Number of Sequences: 1657284
Number of extensions: 17617198
Number of successful extensions: 45489
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45466
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)