Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      23   2.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.3  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    23   3.3  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    23   3.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.5  

>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 539 ITSQNISPSITSLYSGNPHKSISAAN 616
           ITS+N++  I + Y G P+   +  N
Sbjct: 342 ITSKNVAKKIRNFYYGGPNSENNLDN 367


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 322 APSYKIPVPVLDYQSSARPLSARDATKLSFDSPNF 426
           AP++   + VL YQ  ++   A       F SP+F
Sbjct: 230 APAFSTDIKVLGYQRHSKQNVALLCPAQGFPSPSF 264


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 539 ITSQNISPSITSLYSGNPHKSISAAN 616
           ITS+N++  I   Y G P+   +  N
Sbjct: 342 ITSKNVAKKIRDFYYGGPNSENNLDN 367


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 539 ITSQNISPSITSLYSGNPHKSISAAN 616
           ITS+N++  I   Y G P+   +  N
Sbjct: 344 ITSKNVAKKIRDFYYGGPNSENNLDN 369


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 154 RAAVVSRHGAAGPDLGSELWPSPFCAYSSDCA 249
           R A V+R GA    L    W S FC   ++C+
Sbjct: 291 RFAYVTRTGANIKKLIVNTWISLFCVKVTNCS 322


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 703 LVWQTAICFLKPWFAFGNFGPE 638
           L W  A  F  P  A   +GPE
Sbjct: 193 LAWFIAALFTSPILAITQYGPE 214


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 503 LNFLKQRDFSYQITSQNISPSITSLYSG--NPH 595
           +NF+K  +   ++T  +  P ITS  +    PH
Sbjct: 136 VNFMKLDEIEVKVTGNDAPPPITSFETSGLRPH 168


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 420 QFYRPTTLRTVATQSPHVNQPINSYH 497
           Q Y+P T  T  T   + NQ ++  H
Sbjct: 348 QIYQPVTNLTNLTYPSYYNQDVSCTH 373


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 349 QAPVFCKKARGRDHRMSKLFH 287
           + P  C K RGR  R   L H
Sbjct: 244 EKPFECDKCRGRFRRRHHLVH 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,522
Number of Sequences: 336
Number of extensions: 4429
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)