Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    28   1.2  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   2.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   6.1  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    25   8.1  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    25   8.1  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   8.1  

>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 273 GSGVRWNSLLIRWSRPRAFLQNTGACVGLSIVRKTV 380
           G   R    L++WSR R F+  +G C  L  V + +
Sbjct: 33  GQKTRHGGFLVQWSRVRTFVPPSGDCELLPFVSRRI 68


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 226 CAYSSDCAHMKSGWRPVVGSGGIVYSFGG 312
           C Y S     K  ++P VG G I+YS  G
Sbjct: 62  CLYLSTYVEAKRRFKPSVGEGAILYSICG 90


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 535 PNYIPEHFPFDYVFIFRESSQ 597
           P Y+PE  P DY + F  SS+
Sbjct: 170 PTYLPEDNPADYGYFFDTSSR 190


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 290 E*FTHSVVPSTRL---LTKYRCLCWTINRPQDRYQRGTRQSYLSIRP 421
           E F+ SV+ +  L   L +   LCWT +  +D   RG+RQ + +  P
Sbjct: 157 ETFSRSVLMNQELKEFLNRRNILCWTGDVCEDEAFRGSRQFHCTKFP 203


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 138 LSSRIKKSHTVNTSASLTQYDYRCET 61
           L +R ++ + V   A+  +Y+YRC+T
Sbjct: 75  LVNRAQEEYEVEMKAAKEEYEYRCKT 100


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 367 TIDSPTQAPVFCKKARGRDHRMSKL 293
           T+  PT APVF KK      RMS L
Sbjct: 258 TVGKPTSAPVFGKKLEISLQRMSLL 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,795
Number of Sequences: 5004
Number of extensions: 71222
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)