Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997...    32   0.52 
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    31   1.2  
12_02_0211 + 15694061-15694457,15694497-15695452                       29   4.8  
07_03_1165 - 24459156-24460139                                         29   4.8  
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445...    28   6.4  
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     28   8.5  

>07_03_1226 -
           24998276-24998375,24998728-24998849,24998936-24999702,
           25000447-25000618
          Length = 386

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -1

Query: 378 RSCGRLIVQHRHRYFVRRRVDGTTE*VNYSTGPHYRSPATFHMGAVA 238
           R  G   ++HR    VRRR+DG          P+  +PA  H GA+A
Sbjct: 69  RVVGAAAIEHRRCQPVRRRIDGDANRSLEKQLPNKGTPAPLHAGALA 115


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 479 LVNVRRLCGYSSQCRWTVKLGESKDSFVASLADNGLADD 363
           L N+ +LC      RWT   G +K     SLA N L+ D
Sbjct: 435 LSNLSQLCFPQQSSRWTTSCGNAKQLSKLSLASNKLSGD 473


>12_02_0211 + 15694061-15694457,15694497-15695452
          Length = 450

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 497 VIGIDWLVNVRRLCGYSS-QCRWTVKLGESKDSFVASLADNGL 372
           ++G+DWL+  R +  +++ +   T   G++   FV+SL  +GL
Sbjct: 328 ILGMDWLIRHRGIIDFANHKVTITSSNGQTMSFFVSSLRSHGL 370


>07_03_1165 - 24459156-24460139
          Length = 327

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 311 PPNE*TIPPDPTTGLQPLFIWA--QSLE*AQNGDGHSSLPRSGPAAPWR 171
           PP +   PP PT    P  I A     E A++GDG   +P + P    R
Sbjct: 253 PPGQLAAPPTPTPAPAPAAIAAVEAEAEVAEDGDGGELVPTTPPTGARR 301


>10_08_0377 +
           17343244-17343372,17344316-17344393,17344496-17344558,
           17344836-17344883,17345203-17345349,17346264-17346395,
           17346905-17346945,17347605-17347633,17348969-17349096,
           17349919-17349994,17350111-17350231,17350300-17350399,
           17350491-17350572,17350664-17350746,17351978-17352088,
           17352260-17352311,17352363-17352408,17352652-17352860,
           17353128-17353251,17353667-17353741,17353837-17353891,
           17354476-17354595,17354670-17354762,17354869-17355014,
           17355152-17355329,17356876-17357110,17357824-17357912
          Length = 929

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 455 HTISSR*PTNQFLSQTLNFLKQRDFSYQITSQNISPSITSLYS 583
           H  SS   T  F SQTL    QRDF  ++ S+   P   SLY+
Sbjct: 50  HDESSNMETQIFCSQTLRSKVQRDFE-ELPSEAFRPLQDSLYA 91


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 244 CAHMKSGWRPVVGSGGIVYSFGGPVHA--PSYKIPVPVLDYQSSARPLSARD 393
           CAH   G RP +     V  F  P+ +  P  K+P P      S  PL A D
Sbjct: 495 CAHPDRGMRPAIRQAVNVLRFDAPLPSLPPPAKMPPPPGAPSHSRLPLLAAD 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,157,158
Number of Sequences: 37544
Number of extensions: 499088
Number of successful extensions: 1371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)