Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)          30   2.1  
SB_53145| Best HMM Match : TPR_1 (HMM E-Value=3.4e-08)                 29   4.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/77 (32%), Positives = 35/77 (45%)
 Frame = +1

Query: 313 PVHAPSYKIPVPVLDYQSSARPLSARDATKLSFDSPNFTVQRH*EL*PHNLLTLTNQSIP 492
           P   PSY    P L   S+   L + D T LS DS    ++R+  +  HNLL L +  I 
Sbjct: 551 PPTQPSYPPTAPFL---SADTTLLSSDTTLLSPDSTLLILRRNLLILRHNLLILRHNLII 607

Query: 493 ITNP*LFKTTGLLLPNY 543
           +    L     LL+P +
Sbjct: 608 LRRNLLILRHNLLIPRH 624


>SB_56834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 618 PFAAEMDL*GFPEYKDVIEGEMFWDVIW 535
           PF A ++L  FP+Y D +E  M +  +W
Sbjct: 112 PFLAPVNLADFPDYTDYVEQPMDFSTVW 139


>SB_22177| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=4.5e-11)
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 262 GWRPVVGSGGIVYSFGGPVHAPSYKIPVPVLDYQSSARP-LSARDATKL 405
           GW  + G GGIV   GG      Y + + +  Y S   P +    ATKL
Sbjct: 364 GWYDIYGQGGIVAYKGGKAQVTQYSVFIGMTHYISRYFPFVDMSAATKL 412


>SB_53145| Best HMM Match : TPR_1 (HMM E-Value=3.4e-08)
          Length = 200

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 557 SPSITSLYSGNPHKSISAANGWVFPKLFRTEVSKGKPGLQETN-CRLPNK 703
           S  +TSL S N   S S  N W+   L +   +K +P +   + C L N+
Sbjct: 93  STEVTSLMSRNQTASGSTTNEWLSKNLIQVTQNKAEPWVAMAHFCNLTNR 142


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +2

Query: 428  PSNDTENC----SHTISSR*PTN---QFLSQTLNFLKQRDFSYQITSQNISPSITSLYSG 586
            P+N T+      S+T SS   TN   Q LS T +   Q D + Q  +   SP+ TS    
Sbjct: 2998 PANQTDGTYQTLSNTYSSANQTNGTYQTLSNTYSSANQTDGTCQTLNNTYSPASTSRVKA 3057

Query: 587  NPHKSISAANGW 622
            +  + ISA + +
Sbjct: 3058 SKEQIISANSSY 3069


>SB_13009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 512 LKQRDFSYQITSQNISPSITSLYSGNPHKS 601
           L  R F Y+IT+  I P ++ L  G PH++
Sbjct: 209 LSNRGFGYRITAVLIKPRLSPLNHGCPHQT 238


>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 481  QSIPITNP*LFKTTGLLLPNYIPEHFPFDYVFIFRESSQIHFGGE 615
            ++ P + P +F+   L  PN +PEHFP +Y   F    ++H  GE
Sbjct: 1060 ENYPNSFPNIFRMHTLGEPN-LPEHFPENYPNSFPNIFRMHTLGE 1103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,994,643
Number of Sequences: 59808
Number of extensions: 549719
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)