Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical
           protein F27C8.2 protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 324 AFLQNTGACVGLSIVRKTVISEG 392
           AF +NTG+CVG+SI+R+    +G
Sbjct: 249 AFDENTGSCVGISILREIQNEDG 271


>U58757-4|AAC47922.3|  580|Caenorhabditis elegans Hypothetical
           protein C01B10.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 620 TRSPPKWICEDSLNIKT*SKGKC 552
           T+SP KW+ ED L++   +  KC
Sbjct: 83  TKSPQKWVDEDCLHVNIFTSKKC 105


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 620 TRSPPKWICEDSLNIKT*SKGKC 552
           T+SP KW+ ED L++   +  KC
Sbjct: 86  TQSPQKWVDEDCLHVNIFTSDKC 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,188
Number of Sequences: 27780
Number of extensions: 402965
Number of successful extensions: 1009
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)