Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30721
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77280.1 68414.m09000 protein kinase family protein contains ...    29   4.0  
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    28   5.3  
At5g40230.1 68418.m04881 nodulin-related low similarity to MtN21...    27   9.3  

>At1g77280.1 68414.m09000 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 794

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 343 VPVLDYQSSARPLSARDATKLSFDSPNFTVQRH*EL*PHNLLTLTNQSIPITNP 504
           +PV+ +   A  L  RD  +L +DS    +     L P  + ++TN+SIP  +P
Sbjct: 362 IPVVQW---ALKLPPRDTKQLGYDSSEDNLSTLNALVPFGINSITNKSIPDNSP 412


>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 222 RRWPQLTAKIRACSAVAADNSRALHIF 142
           + W +LTA + +CS   +D+S   H F
Sbjct: 89  KSWEKLTASVESCSVRVSDSSSGAHRF 115


>At5g40230.1 68418.m04881 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 370

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 274 VVGSGGIVYSFGGPVHAPSYKIPVPVLDYQSSARPLS 384
           V+ SGG+V SFG  +H     +  PV  Y S  +PLS
Sbjct: 266 VMYSGGLVSSFGSVIHTWGLHLKGPV--YISLFKPLS 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,132
Number of Sequences: 28952
Number of extensions: 388220
Number of successful extensions: 1082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)