Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30720
         (506 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000065CA83 Cluster: Homolog of Homo sapiens "Transme...    34   1.6  
UniRef50_O49471 Cluster: TMV resistance protein N-like; n=1; Ara...    34   2.1  
UniRef50_Q89AZ4 Cluster: Flagellar motor switch protein fliM; n=...    32   6.5  

>UniRef50_UPI000065CA83 Cluster: Homolog of Homo sapiens
           "Transmembrane protein UO-44B; n=1; Takifugu
           rubripes|Rep: Homolog of Homo sapiens "Transmembrane
           protein UO-44B - Takifugu rubripes
          Length = 721

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 333 HSINLHFTLWSLAERTQNISHVYTSVIRCSVVGVFKEAKLVGCNE 199
           + IN HF +  + E     S VY S +RC V  V +   +V CNE
Sbjct: 356 NEINGHFPICFVYEALDGRSQVYQSDLRCVVADVVRHEAVVTCNE 400


>UniRef50_O49471 Cluster: TMV resistance protein N-like; n=1;
            Arabidopsis thaliana|Rep: TMV resistance protein N-like -
            Arabidopsis thaliana (Mouse-ear cress)
          Length = 1167

 Score = 33.9 bits (74), Expect = 2.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 278  IFCVRSASDQSVKCKFIE*LTHDGTVRGTETIVYIVLCDIETRLIIVRCGLSYVY 442
            +F   +    S+KC   +   H GT   TE  +   + D E+RL +++CGL  VY
Sbjct: 1054 VFICYTRCSNSIKCLQDQ---HSGTCTPTEAFLEFGVTDKESRLEVLKCGLRLVY 1105


>UniRef50_Q89AZ4 Cluster: Flagellar motor switch protein fliM; n=1;
           Buchnera aphidicola (Baizongia pistaciae)|Rep: Flagellar
           motor switch protein fliM - Buchnera aphidicola subsp.
           Baizongia pistaciae
          Length = 331

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 421 PHYD*SSFYIT*HNVNDRLGATYSSVVRQSLDKFTLYTLVTCR 293
           P+Y  + +Y+T HN+ DRL   +   ++Q     + Y+ V C+
Sbjct: 26  PYYQTTDYYLTYHNMKDRLENMHECFLKQFTKHISEYSDVDCK 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,027,544
Number of Sequences: 1657284
Number of extensions: 7196228
Number of successful extensions: 15742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15734
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)