Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30720
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    30   0.93 

>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 349 SVVRQSLDKFTLYTLVTCRTDTKYFTRLYECYQMQRRRRLQG 224
           S VRQ +D + LYT+V      KY   L   Y    R+RL+G
Sbjct: 687 SFVRQEMDAYRLYTVVPYL--VKYIDNLTNIYVRFNRKRLKG 726


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,334,952
Number of Sequences: 37544
Number of extensions: 202685
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)