Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30720
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2)                   28   5.1  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             27   6.7  

>SB_48321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 101 IKKETDDPVVHVIDATTLTRNHCPXXXXXXXPISLHPTSLASLKTPTTLHL 253
           I+  T+D +  V+D +    N  P       P   H +S A   TPT+ H+
Sbjct: 105 IRTRTEDDIAKVLDCSKFRLNPVPPSLDQLLPDVHHDSSSAISATPTSNHI 155


>SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2)
          Length = 121

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 341 HDGTVRGTETIVYIVLCDIETRLIIVRCGLSYVY 442
           HDG V  T     +  CD   R+++  CG  +VY
Sbjct: 72  HDGIVPRTICFHKLSCCDDPIRVVVKNCGSFFVY 105


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 194  PISLHPTSLASLKTPTTLHLIT 259
            P S  PTS +S  TPTTL+ +T
Sbjct: 1320 PTSSTPTSSSSTSTPTTLNTVT 1341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,159
Number of Sequences: 59808
Number of extensions: 258527
Number of successful extensions: 571
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)