Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30720
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   7.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   7.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 322 FTLYTLVTCRTDTKYFTRLYECYQM 248
           ++LYT V  R DTK F +L   Y+M
Sbjct: 142 YSLYTAVITRPDTK-FIQLPPLYEM 165


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 322 FTLYTLVTCRTDTKYFTRLYECYQM 248
           ++LYT V  R DTK F +L   Y+M
Sbjct: 142 YSLYTAVITRPDTK-FIQLPPLYEM 165


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 91  RNLSCALARRARGPVGR 41
           R L CAL      PVGR
Sbjct: 50  RQLKCALGEAPCDPVGR 66


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 91  RNLSCALARRARGPVGR 41
           R L CAL      PVGR
Sbjct: 50  RQLKCALGEAPCDPVGR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,477
Number of Sequences: 438
Number of extensions: 2065
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)