Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30720
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    34   0.063
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (...    29   1.8  
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (...    29   1.8  
At3g45800.1 68416.m04957 hypothetical protein                          28   3.1  
At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    28   3.1  
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    28   4.2  
At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containi...    27   5.5  
At4g11490.1 68417.m01847 protein kinase family protein contains ...    27   7.3  
At4g25150.1 68417.m03620 acid phosphatase, putative similar to a...    27   9.6  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   9.6  

>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1167

 Score = 33.9 bits (74), Expect = 0.063
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 278  IFCVRSASDQSVKCKFIE*LTHDGTVRGTETIVYIVLCDIETRLIIVRCGLSYVY 442
            +F   +    S+KC   +   H GT   TE  +   + D E+RL +++CGL  VY
Sbjct: 1054 VFICYTRCSNSIKCLQDQ---HSGTCTPTEAFLEFGVTDKESRLEVLKCGLRLVY 1105


>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 639

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 142 VDHVNDWVVRFFLDRALRNLSCA 74
           V+HVN+WV R + D+ LR LS A
Sbjct: 508 VNHVNNWVTRAYCDKVLR-LSAA 529


>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 808

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 142 VDHVNDWVVRFFLDRALRNLSCA 74
           V+HVN+WV R + D+ LR LS A
Sbjct: 508 VNHVNNWVTRAYCDKVLR-LSAA 529


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 399 SISHSTM*TIVSVPRTVPSCVSHSINLHFTLWSLAERTQNISHVYTSVI 253
           SISH+   TI  V   + +C+   ++L  T+  L E   NISH  T  I
Sbjct: 113 SISHNVSETIDKVKNLIETCIYKYMSLEETVTYL-EDNHNISHHLTITI 160


>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 417 CGVVYHMCILIRVCYMLTAASRSAPVFY 500
           C V++H+ I++ + ++L+  +RS  VFY
Sbjct: 3   CSVIHHVVIVLLLLWVLSYLNRSHAVFY 30


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 374 RSSRCHVQFRRASVTR*IYTLHSGHLQNGHKIFHT-SIRVLSDAASSASSRKLNLLDATK 198
           RSSR  +       T   Y  HS H    H + H   +R  +++ SS+SS    LLD  +
Sbjct: 124 RSSRSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRPKNESHSSSSS-SSQLLDHNQ 182

Query: 197 LG 192
           +G
Sbjct: 183 MG 184


>At1g23450.1 68414.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 661

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 224 SLKTPTTLHLITLV*TCEIFCVRSASDQSVKCKFIE*LTHDG 349
           SL  P +LH  TLV  C I     A+D +V C  I+  T  G
Sbjct: 423 SLSLPESLHSCTLVHCCAIKS-GYAADVAVSCSLIDAYTKSG 463


>At4g11490.1 68417.m01847 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 636

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 196 WVFLVLLIWAVVSRQCRRVDHVNDW 122
           WV L+ +I A+ S+QC    +   W
Sbjct: 13  WVVLISIIGAISSQQCNETGYFEPW 37


>At4g25150.1 68417.m03620 acid phosphatase, putative similar to acid
           phosphatase-1(1); Apase-1(1) [Lycopersicon esculentum]
           GI:7705154, acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 260

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 339 VSHSINLHFTLWSLAERTQNISHVYTSVIRCS 244
           ++ ++NLH T W  A  T N++   T    C+
Sbjct: 40  INDNVNLHCTSWRFAAETNNLAPWKTIPAECA 71


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 371 SSRCHVQFRRASVTR*IYTLHSGHLQNGHKIFHTSIRVLSDAASSASSRK 222
           SSR  VQF + S     Y L +  L+N  K F   + ++ DA S A  RK
Sbjct: 336 SSRTEVQFSQLSSEDKSYALMADLLRNQAKKFKNIVAIV-DACSLAGLRK 384


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,118,619
Number of Sequences: 28952
Number of extensions: 163990
Number of successful extensions: 347
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)