Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30719
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    27   3.3  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 556 NLCSCNIKRLGGSSYFAKPIFITKLGGKISPMRFFFTKLL 675
           N C CNI RLG S       ++ ++     P R F T LL
Sbjct: 867 NSC-CNIYRLGYSMCMRAQAYLKRMKDIFIPQRMFITDLL 905


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 576 NVATAQILKTTFCRMNIILSKYPVTTVKTGADLESCVSM*QTLINIH 436
           +V TA +LKT   ++NI  + +P T  +    L+    + Q   NIH
Sbjct: 581 SVETANMLKTVLVQLNIPFAIFPSTIGQVRRQLQQGRRLYQWARNIH 627


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,904
Number of Sequences: 5004
Number of extensions: 51040
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)